Gene
| Gene Model ID | pfu_aug1.0_4452.1_23578 |
|---|---|
| Locus | scaffold4452.1 : 13366 ... 17293 : + |
| To GenomeBrowser | scaffold4452.1:13366..17293 |
| Genes list of scaffold | scaffold4452.1 |
| Synonym | pfu_aug2.0_426.1_20758 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4452.1_23578.t1 | 4 | 1 | LRR_8 | 59 | 101 | 1.7e-18 | 66.0 | 1.5e-06 | 0.0046 | 16.6 |
| pfu_aug1.0_4452.1_23578.t1 | 6 | 1 | LRR_4 | 66 | 106 | 1.0e-29 | 101.6 | 1.5e-09 | 4.6e-06 | 26.1 |
| pfu_aug1.0_4452.1_23578.t1 | 8 | 1 | LRR_1 | 67 | 88 | 1.0e-12 | 46.1 | 0.027 | 81.0 | 3.8 |
| pfu_aug1.0_4452.1_23578.t1 | 6 | 1 | LRR_7 | 67 | 81 | 2.3e-10 | 38.9 | 0.17 | 510.0 | 1.7 |
| pfu_aug1.0_4452.1_23578.t1 | 6 | 2 | LRR_4 | 90 | 128 | 1.0e-29 | 101.6 | 4.0e-15 | 1.2e-11 | 43.9 |
| pfu_aug1.0_4452.1_23578.t1 | 4 | 2 | LRR_8 | 90 | 147 | 1.7e-18 | 66.0 | 2.9e-13 | 8.7e-10 | 38.2 |
| pfu_aug1.0_4452.1_23578.t1 | 8 | 2 | LRR_1 | 90 | 111 | 1.0e-12 | 46.1 | 9.7e-05 | 0.29 | 11.3 |
| pfu_aug1.0_4452.1_23578.t1 | 6 | 2 | LRR_7 | 90 | 105 | 2.3e-10 | 38.9 | 4.2e-05 | 0.12 | 12.6 |
| pfu_aug1.0_4452.1_23578.t1 | 6 | 3 | LRR_4 | 113 | 154 | 1.0e-29 | 101.6 | 4.8e-11 | 1.4e-07 | 30.9 |
| pfu_aug1.0_4452.1_23578.t1 | 8 | 3 | LRR_1 | 113 | 134 | 1.0e-12 | 46.1 | 1.4e-06 | 0.0042 | 16.9 |
| pfu_aug1.0_4452.1_23578.t1 | 6 | 3 | LRR_7 | 113 | 128 | 2.3e-10 | 38.9 | 1.4e-06 | 0.0043 | 17.0 |
| pfu_aug1.0_4452.1_23578.t1 | 8 | 4 | LRR_1 | 137 | 153 | 1.0e-12 | 46.1 | 0.32 | 960.0 | 0.5 |
| pfu_aug1.0_4452.1_23578.t1 | 4 | 3 | LRR_8 | 145 | 194 | 1.7e-18 | 66.0 | 0.00011 | 0.31 | 10.8 |
| pfu_aug1.0_4452.1_23578.t1 | 6 | 4 | LRR_4 | 159 | 199 | 1.0e-29 | 101.6 | 6.7e-07 | 0.002 | 17.7 |
| pfu_aug1.0_4452.1_23578.t1 | 8 | 5 | LRR_1 | 159 | 176 | 1.0e-12 | 46.1 | 0.00074 | 2.2 | 8.6 |
| pfu_aug1.0_4452.1_23578.t1 | 6 | 4 | LRR_7 | 159 | 173 | 2.3e-10 | 38.9 | 0.0067 | 20.0 | 5.9 |
| pfu_aug1.0_4452.1_23578.t1 | 4 | 4 | LRR_8 | 183 | 240 | 1.7e-18 | 66.0 | 1.1e-09 | 3.2e-06 | 26.8 |
| pfu_aug1.0_4452.1_23578.t1 | 8 | 6 | LRR_1 | 188 | 202 | 1.0e-12 | 46.1 | 0.34 | 1000.0 | 0.5 |
| pfu_aug1.0_4452.1_23578.t1 | 6 | 5 | LRR_4 | 190 | 220 | 1.0e-29 | 101.6 | 1.4e-07 | 0.00041 | 19.9 |
| pfu_aug1.0_4452.1_23578.t1 | 6 | 6 | LRR_4 | 205 | 242 | 1.0e-29 | 101.6 | 6.7e-10 | 2.0e-06 | 27.2 |
| pfu_aug1.0_4452.1_23578.t1 | 6 | 5 | LRR_7 | 205 | 221 | 2.3e-10 | 38.9 | 0.033 | 97.0 | 3.8 |
| pfu_aug1.0_4452.1_23578.t1 | 8 | 7 | LRR_1 | 206 | 226 | 1.0e-12 | 46.1 | 0.003 | 8.8 | 6.8 |
| pfu_aug1.0_4452.1_23578.t1 | 6 | 6 | LRR_7 | 228 | 241 | 2.3e-10 | 38.9 | 0.0034 | 10.0 | 6.8 |
| pfu_aug1.0_4452.1_23578.t1 | 8 | 8 | LRR_1 | 229 | 242 | 1.0e-12 | 46.1 | 0.0023 | 6.9 | 7.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4452.1_23578.t1 | gi|291235460|ref|XP_002737663.1| | PREDICTED: leucine-rich repeat-containing protein 47-like [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_4452.1_23578.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4452.1_23578.t1 atgcttgaatgcaaagacgctttacacagtaattgtacaagcaatcaaatgacattgacaaaagtgaaaatggagaactc gtgggaagagatcagcacagcggcagctgaaaacagacgagaattgacactccatggagcagaaataagtaaaagaatag aaaatgaaggtctagatgaatcaatctacagtttaaaatcgttgaatttccttgacatttctaaaacatgtctacgagaa ttgacatctggaatagggaatttagccaatttgacagatctggtattgcacaacaatgagttagaatccataccaccaga gataggaggacttcagaagttaaaattccttgatatttcaaacaataaacttacttctttaccagatacaataccaaatc tgtctgccttgcagtcattcaatgctagtatgaacaaactgaaggcaatgccgtctgtagagaaacttctaatgctccat attctgaacattgcgcataatgagcttgaaagccttcctgatggaatctacaatgcagaacttgttcacttgagtcagat tgtcgcaaataataactcgatatctgaatttgaagcagagatttctgacttgccccatctaaatttgctgaacctggaat caaattgtttgacctctgtaccattagaactcagtgaatgtcctaaactgaaggagttaaatctgaagggaaataaattc aaggacagaagatttggcaaacttgttgaacaatgtccaacgaaatctatgcttgattaccttgcaactttactcagaaa agaaaatgcagattcaaaaggaaaaccaaaagtaaatcaaagaagaagaaaggaaagaaagcagaggatgatgaagttga aaagttaa |
|
Protein
| Protein ID | pfu_aug1.0_4452.1_23578.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4452.1_23578.t1 MLECKDALHSNCTSNQMTLTKVKMENSWEEISTAAAENRRELTLHGAEISKRIENEGLDESIYSLKSLNFLDISKTCLRE LTSGIGNLANLTDLVLHNNELESIPPEIGGLQKLKFLDISNNKLTSLPDTIPNLSALQSFNASMNKLKAMPSVEKLLMLH ILNIAHNELESLPDGIYNAELVHLSQIVANNNSISEFEAEISDLPHLNLLNLESNCLTSVPLELSECPKLKELNLKGNKF KDRRFGKLVEQCPTKSMLDYLATLLRKENADSKGKPKVNQRRRKERKQRMMKLKS |
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