Gene
Gene Model ID | pfu_aug1.0_4452.1_23579 |
---|---|
Locus | scaffold4452.1 : 19576 ... 22435 : - |
To GenomeBrowser | scaffold4452.1:19576..22435 |
Genes list of scaffold | scaffold4452.1 |
Synonym | pfu_aug2.0_426.1_20757 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4452.1_23579.t1 | 1 | 1 | EMP24_GP25L | 3 | 156 | 5.19994e-41 | 140.3 | 4.2039e-45 | 5.70006e-41 | 140.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_4452.1_23579.t1 | gi|260834239|ref|XP_002612119.1| | hypothetical protein BRAFLDRAFT_127851 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 2 |
egg-4cell | 2 |
8-16cell | 2 |
egg-Dshape | 2 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
maleGonad | 1 |
Transcript
Transcript ID | pfu_aug1.0_4452.1_23579.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4452.1_23579.t1 atgagccttatgtttgaagtagccgaaggtggcttcttagacatcgatgtcaagatttatggcccagatggtaaagtgat tcactctggtgacagagagtcaaacggtaaatacacgttcgctgctcacatggatggtgtatacaaatactgcttcagta acaagatgtcaacgatgacacctaaaattgttatgtttaccatggacgtaggagaaaaaccaaaagaacaggataataat atggagacagatgcccatcataacaagctagctgaaatgattaacgagttgtcaacagccttgactggcgtaaaacacga acaagaatacatggaagtcagagagaggattcatagagcaataaatgacaacactaactcccgagtggtgctatggtcat ttttcgaggctctagttctggttgccatgacattaggacaagtatactacctgaaaagatttttcgaagttcgaagagta gtctga |
Protein
Protein ID | pfu_aug1.0_4452.1_23579.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4452.1_23579.t1 MSLMFEVAEGGFLDIDVKIYGPDGKVIHSGDRESNGKYTFAAHMDGVYKYCFSNKMSTMTPKIVMFTMDVGEKPKEQDNN METDAHHNKLAEMINELSTALTGVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQVYYLKRFFEVRRV V |