Gene
| Gene Model ID | pfu_aug1.0_4452.1_23579 |
|---|---|
| Locus | scaffold4452.1 : 19576 ... 22435 : - |
| To GenomeBrowser | scaffold4452.1:19576..22435 |
| Genes list of scaffold | scaffold4452.1 |
| Synonym | pfu_aug2.0_426.1_20757 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4452.1_23579.t1 | 1 | 1 | EMP24_GP25L | 3 | 156 | 5.19994e-41 | 140.3 | 4.2039e-45 | 5.70006e-41 | 140.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4452.1_23579.t1 | gi|260834239|ref|XP_002612119.1| | hypothetical protein BRAFLDRAFT_127851 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 2 |
| 8-16cell | 2 |
| egg-Dshape | 2 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4452.1_23579.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4452.1_23579.t1 atgagccttatgtttgaagtagccgaaggtggcttcttagacatcgatgtcaagatttatggcccagatggtaaagtgat tcactctggtgacagagagtcaaacggtaaatacacgttcgctgctcacatggatggtgtatacaaatactgcttcagta acaagatgtcaacgatgacacctaaaattgttatgtttaccatggacgtaggagaaaaaccaaaagaacaggataataat atggagacagatgcccatcataacaagctagctgaaatgattaacgagttgtcaacagccttgactggcgtaaaacacga acaagaatacatggaagtcagagagaggattcatagagcaataaatgacaacactaactcccgagtggtgctatggtcat ttttcgaggctctagttctggttgccatgacattaggacaagtatactacctgaaaagatttttcgaagttcgaagagta gtctga |
|
Protein
| Protein ID | pfu_aug1.0_4452.1_23579.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4452.1_23579.t1 MSLMFEVAEGGFLDIDVKIYGPDGKVIHSGDRESNGKYTFAAHMDGVYKYCFSNKMSTMTPKIVMFTMDVGEKPKEQDNN METDAHHNKLAEMINELSTALTGVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQVYYLKRFFEVRRV V |
|