Gene
Gene Model ID | pfu_aug1.0_44590.1_12559 |
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Locus | scaffold44590.1 : 186 ... 2010 : + |
To GenomeBrowser | scaffold44590.1:186..2010 |
Genes list of scaffold | scaffold44590.1 |
Synonym | pfu_aug2.0_35.1_16755 |
Manual annotation
Study field | Biomineralization |
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Gene name | actin |
Description | Actin partial sequence. BLASTP top hit to EU234531(Crassostrea ariakensis). The amino acid sequence lacks N-terminal region of 44 amino acids compared with other actin sequences. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_44590.1_12559.t1 | 1 | 1 | Actin | 7 | 332 | 0.0 | 478.6 | 0.0 | 0.0 | 478.3 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
maleGonad | 1 |
mantle | 1 |
mantleEdge | 1 |
mantlePallium | 3 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_44590.1_12559.t1 |
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Definition | - |
>pfu_aug1.0_44590.1_12559.t1 atggttggtatgggacagaaggacagctatgtaggagacgaggcccagagtaagagaggtatcctcaccctcaaataccc cattgagcacggtattgtcacaaactgggacgatatggagaagatctggcatcataccttctacaatgaactccgtgtgg cccccgaggaacaccctgttctcctgaccgaggctccactgaacccaaaggcaaacagagaaaagatgacacagatcatg tttgaaaccttcaactctcccgccatgtacgtagctatccaggccgtactgtcactgtacgcttctggccgtactacagg tatcgtactggactctggggatggtgtcacccacacagtacctatctacgagggatacgcccttccccacgccatcatga ggttggatcttgccggacgtgatctcacagattaccttatgaagatcctcacagagcgtggctactcattcaccaccaca gctgagagagaaatcgtaagagacattaaagaaaaattgtgctatgtcgccctagactttgaacaagaaatggctaccgc cgcgtcatcatcatctctagagaagagttacgaacttcccgacggtcaggtcatcaccattggcaacgaaaggttcagat gtcccgaggcaatgttccagccatctttcctcggtatggaatctgcgggtatccacgaaacaacatacaacagtattatg aaatgtgacgtagacattcgtaaagacttgtacgcaaacactgttttatctggtggttctaccatgtacccaggtatcgc tgaccgtatgcagaaagaaatcacagctcttgctccatcaacaatgaaaatcaagatcatagctccaccagagaggaaat actccgtgtggatcggtggatctatcctcgcttctctctccaccttccagcagatgtggatcagcaaacaggaatacgac gagtccggtccatccatcgtccacaggaagtgcttctaa |
Protein
Protein ID | pfu_aug1.0_44590.1_12559.t1 |
---|---|
Definition | - |
>pfu_aug1.0_44590.1_12559.t1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM FETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFTTT AEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIM KCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYD ESGPSIVHRKCF |