Gene
| Gene Model ID | pfu_aug1.0_446.1_29259 |
|---|---|
| Locus | scaffold446.1 : 32787 ... 48245 : - |
| To GenomeBrowser | scaffold446.1:32787..48245 |
| Genes list of scaffold | scaffold446.1 |
| Synonym | pfu_aug2.0_63.1_10219 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_446.1_29259.t1 | 1 | 1 | F-box-like | 31 | 70 | 1.0e-10 | 41.1 | 2.9e-14 | 1.4e-10 | 40.6 |
| pfu_aug1.0_446.1_29259.t1 | 4 | 1 | WD40 | 108 | 140 | 3.6e-12 | 45.6 | 3.6e-09 | 1.8e-05 | 24.4 |
| pfu_aug1.0_446.1_29259.t1 | 4 | 2 | WD40 | 452 | 468 | 3.6e-12 | 45.6 | 0.29 | 1400.0 | -0.7 |
| pfu_aug1.0_446.1_29259.t1 | 4 | 3 | WD40 | 533 | 548 | 3.6e-12 | 45.6 | 0.048 | 240.0 | 1.8 |
| pfu_aug1.0_446.1_29259.t1 | 4 | 4 | WD40 | 558 | 590 | 3.6e-12 | 45.6 | 2.3e-07 | 0.0011 | 18.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_446.1_29259.t1 | gi|260828799|ref|XP_002609350.1| | hypothetical protein BRAFLDRAFT_236265 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_446.1_29259.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_446.1_29259.t1 atgccgatacattgtaatgtgataggtgacagaagaagtcctacagaagcagaggaagatgaggaatgttgtagtatttg gcaggagacccctgattctctcctgttacatatcttctactctctggatgcccatggtctagtatcagcttcacaagctt gtaagacttggcacagagtggctcaggatgagagtttatggcgtaacctgatgtatgtgaagtttggtataaagtgtcac caactagccccgggaaagaggagctggcaggcggagtacaaacgactgtattaccatgctcctacagaactcagcgagaa cctaactctacacagtgacgaggtgttacatgtcagcttctcgcatcgaggggatatgttctctacaacctcaaaggatg ccaccatcaaggtttggaatgtaggatacccaaccacacagaaattcagccaggatttccgagagcttttgtcctgggac ttcacacagttttcctgttttaatgctagtgattcaatgctactggtatccagtgtcaaaaccactgattacctagaaag gaggggttatgtagcaatattatcattactacacaattttgatatcttacgagttgtatccatggatccttcacagcttt ttggtgcatggttagacaactctcactttctcggaggattcctagaaatcagtttggatagatttgccacgacagtacag attgaagcctttgatatgtcagatcatgaattaccattggaaccaagtaaaatctccgtggaagaggggcttggttgtaa cttgttcacattcagtagtgaaacagcgagtctcatcaagttcttgactgtagctaacgttccttcaagacccctgattc agaactctttggaatctaagacattagaggaaagctcggaaagtgaaatctcttcacctggccatgatcttcgacagttt tatgagtgtaaaggatgtgaggaaatggaaagtcccgttccatctactagtgccaatattaacgttagtgcttgttcttg tgactcgccaggtgttgatctttgtgctgatatgactgacgaaatggaatcattgagaacggatagcgatcggaacagaa atctgatattcgttactggtgactttgccgtagcgctacatcaactaggaataaaaaatgtatcaccatcactacttgaa tccaaacaacgagcgtctggggaggacatcatggatagctcattagacggggactatgatcaagaagaacagcacatggt tgttaatttctgtaataacgatattcagctacgtcacatacgtaaatcagataaacctgatcacctgatagatctgtacg gacatgttacaggactgtgtctatctcatgaccataggtacctctttctgaactgccgaccttggcatgggaatgtagat cgttctgatccttgggccacgccggatctctctaacaacattgagatacgcgtcatagacctgtggaccatgaaggacac aggtgtacagtatatgggacataaaggtttctccaaatccaccatgtgctgttttgtgttcttagacgttagtctagact atgttggaagcggtagtgaggatgctaaaggatacctatgggacagacattatgccgttaatcttgccatctacgagcac ccctggggggtcgtcaacgctgtcggcttcaatcctcaaaatcaggaatatctggtcactgtgtgtgatgacaaggtcat caaaatatggaggtcaaggtcagaaatgaagaagtacaacattcctcctccactgcccgtaaaggacacggaaaatagtg aaagtactgagcaaaatcttagttga |
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Protein
| Protein ID | pfu_aug1.0_446.1_29259.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_446.1_29259.t1 MPIHCNVIGDRRSPTEAEEDEECCSIWQETPDSLLLHIFYSLDAHGLVSASQACKTWHRVAQDESLWRNLMYVKFGIKCH QLAPGKRSWQAEYKRLYYHAPTELSENLTLHSDEVLHVSFSHRGDMFSTTSKDATIKVWNVGYPTTQKFSQDFRELLSWD FTQFSCFNASDSMLLVSSVKTTDYLERRGYVAILSLLHNFDILRVVSMDPSQLFGAWLDNSHFLGGFLEISLDRFATTVQ IEAFDMSDHELPLEPSKISVEEGLGCNLFTFSSETASLIKFLTVANVPSRPLIQNSLESKTLEESSESEISSPGHDLRQF YECKGCEEMESPVPSTSANINVSACSCDSPGVDLCADMTDEMESLRTDSDRNRNLIFVTGDFAVALHQLGIKNVSPSLLE SKQRASGEDIMDSSLDGDYDQEEQHMVVNFCNNDIQLRHIRKSDKPDHLIDLYGHVTGLCLSHDHRYLFLNCRPWHGNVD RSDPWATPDLSNNIEIRVIDLWTMKDTGVQYMGHKGFSKSTMCCFVFLDVSLDYVGSGSEDAKGYLWDRHYAVNLAIYEH PWGVVNAVGFNPQNQEYLVTVCDDKVIKIWRSRSEMKKYNIPPPLPVKDTENSESTEQNLS |
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