Gene
| Gene Model ID | pfu_aug1.0_447.1_29262 |
|---|---|
| Locus | scaffold447.1 : 3802 ... 11335 : - |
| To GenomeBrowser | scaffold447.1:3802..11335 |
| Genes list of scaffold | scaffold447.1 |
| Synonym | pfu_aug2.0_1269.1_31582 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | nodal-like |
| Description | NCBI BLASTP hit to gb|ACB42422.1| |
| mRNA evidence |
| Study field | other |
|---|---|
| Gene name | TGFbeta |
| Description | BLASTP best hit to NCBI Accession ACB42422 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_447.1_29262.t1 | 1 | 1 | TGFb_propeptide | 7 | 125 | 3.3e-10 | 39.6 | 6.4e-14 | 4.7e-10 | 39.1 |
| pfu_aug1.0_447.1_29262.t1 | 2 | 1 | TGF_beta | 141 | 161 | 4.1e-30 | 104.1 | 0.98 | 7300.0 | -2.8 |
| pfu_aug1.0_447.1_29262.t1 | 2 | 2 | TGF_beta | 216 | 318 | 4.1e-30 | 104.1 | 1.3e-33 | 9.4e-30 | 102.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_447.1_29262.t1 | gi|171190136|gb|ACB42422.1| | TGFbeta family member nodal [Biomphalaria glabrata] | 4.06377e-44 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_447.1_29262.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_447.1_29262.t1 atgtttggaaatggacgttatccgatggagtcgatgttgacactgtacagacggctgcaggacggacagacactacacag ggcgtcaaacaccatgttatctcattccacagatacagtcagaagctatactgccagaggagagtccgaactggacatac atttcaagatcgcctctttaccagacacagaagtgctccataaagccgaacttcgatttaaaaaggatacagcacaaatc aagatgagagtgttcttgacaataaggagggacgaccgtaaaattaggacacatgtatatcaagtaaaacccatatctcg ctcagagcacctcgcaatagacgtcactgcattagccagaccgtgggtagagggatacaacggccgagtttccctgcagg cccagattaaggcgtgttctatggtgacgtgtggacccattccagcatcttcgtcccatctactgcttttcactcaggac aacagctttttagaagaactacaccgaagtggtgccttttctttatcgaattcctcgtttgttccacatgtgatagagaa aagagacacgtcccgatctcttaacattgattctaacagcagaaggaaaaacattaaagacagatatcgtacaaagaagc gacgtagagtgtgtagttcgtccaaattaattgttgactttaagcatctaggatgggcacggtatatagttatacccaaa agctacgacgcaaggctttgtagaggtagctgtccgtcgccagtaaaaccagaactgtccccaacaaaccacgccctcat acagagcctgatgagactcggcaatactcggcgaattccgatgccgtgctgcgtcccgaaaacgctacttccgctgagta tgctatattatcatggagaggaagtagttatacgtcaccacaaggacatgatagtagaaagctgcgcgtgtagatga |
|
Protein
| Protein ID | pfu_aug1.0_447.1_29262.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_447.1_29262.t1 MFGNGRYPMESMLTLYRRLQDGQTLHRASNTMLSHSTDTVRSYTARGESELDIHFKIASLPDTEVLHKAELRFKKDTAQI KMRVFLTIRRDDRKIRTHVYQVKPISRSEHLAIDVTALARPWVEGYNGRVSLQAQIKACSMVTCGPIPASSSHLLLFTQD NSFLEELHRSGAFSLSNSSFVPHVIEKRDTSRSLNIDSNSRRKNIKDRYRTKKRRRVCSSSKLIVDFKHLGWARYIVIPK SYDARLCRGSCPSPVKPELSPTNHALIQSLMRLGNTRRIPMPCCVPKTLLPLSMLYYHGEEVVIRHHKDMIVESCACR |
|