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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_44881.1_41335
Locus scaffold44881.1 : 96 ... 4675 : +
To GenomeBrowser scaffold44881.1:96..4675
Genes list of scaffold scaffold44881.1
Synonym pfu_aug2.0_432.1_07513

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_44881.1_41335.t1 3 1 Ldl_recept_b 32 74 1.2e-14 54.3 1.9e-07 0.0014 18.9
pfu_aug1.0_44881.1_41335.t1 3 2 Ldl_recept_b 77 116 1.2e-14 54.3 1.2e-09 8.8e-06 25.9
pfu_aug1.0_44881.1_41335.t1 1 1 FXa_inhibition 127 163 4.4e-11 42.7 8.6e-15 6.4e-11 42.1
pfu_aug1.0_44881.1_41335.t1 3 3 Ldl_recept_b 219 246 1.2e-14 54.3 6.6e-05 0.49 10.7

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_44881.1_41335.t1 gi|321462894|gb|EFX73914.1| hypothetical protein DAPPUDRAFT_307561 [Daphnia pulex] 8.00141e-43

Transcript
Transcript IDpfu_aug1.0_44881.1_41335.t1
Definition-
>pfu_aug1.0_44881.1_41335.t1
atgcgacgagtcgacttgttgagctataattacgcagctctggtatcaggattacataacacgatagcgttagatttcca
ttataataagagtaacatttattggacggatgttgttgacgataaaatatacagaggaaggatgacgtcaaacagtctga
ttgatgttgagccaatcgtagatgttggtttagccacgaccgaaggacttgccatcgattggataggtaacaatctgtac
tgggtcgagagcaatctagatcaaatcgaagcaaacaagtttgatggctccaatgtaacagtcattcagcaaaccatcac
acaaccgtttgatctacaagtgtaccatccaaaacggcaaccaaacgccgttaatccgtgtaaggagaataatggaggat
gctcgcatctgtgtctgatcaattttaatcagaaagcgggctgtaaatgtcctcatctatggaaactgaaaaaagacgga
aaaacgtgtgagagagacatgagttttctattgttcggcaaaaataacgaaatccgtggagtggaccttgtcaacgcaaa
ctacagtgtcatgccgaccattacattaccgcatgtaaaccgaccaatcgctgtggactttgatattggcattgcggcag
atgcatcagaggaaggtcggatattgtgggcggacgaggggttaaaggtcatcaacagtgcacttatcaacggatcttct
gtagatacaataattgactcgggtaagataaagacaaaatttatatgctttctctctgtgatacagtaa

Protein
Protein IDpfu_aug1.0_44881.1_41335.t1
Definition-
>pfu_aug1.0_44881.1_41335.t1
MRRVDLLSYNYAALVSGLHNTIALDFHYNKSNIYWTDVVDDKIYRGRMTSNSLIDVEPIVDVGLATTEGLAIDWIGNNLY
WVESNLDQIEANKFDGSNVTVIQQTITQPFDLQVYHPKRQPNAVNPCKENNGGCSHLCLINFNQKAGCKCPHLWKLKKDG
KTCERDMSFLLFGKNNEIRGVDLVNANYSVMPTITLPHVNRPIAVDFDIGIAADASEEGRILWADEGLKVINSALINGSS
VDTIIDSGKIKTKFICFLSVIQ

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