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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_4493.1_66993
Locus scaffold4493.1 : 43477 ... 52525 : -
To GenomeBrowser scaffold4493.1:43477..52525
Genes list of scaffold scaffold4493.1
Synonym NA

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_4493.1_66993.t1 1 1 RIIa 21 55 2.4e-13 49.2 6.1e-17 4.5e-13 48.3

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_4493.1_66993.t1 gi|189235535|ref|XP_972604.2| PREDICTED: cAMP-dependent protein kinase type I regulatory subunit isoform X1 [Tribolium castaneum] 3.0e-20

Transcript
Transcript IDpfu_aug1.0_4493.1_66993.t1
Definition-
>pfu_aug1.0_4493.1_66993.t1
atggcagcgaactcagacgaagagcaaagcttgaaagaatgcgagaattatgtgcaaaaacataatgtccaacaaattct
taaggattgcatcgtgcaactgtgtatcaacagacctgacaaccccatcgtcttcctcagggaacactttgaacgtctag
aaaaactttcacgcaaaacaaattatggaaaggagcaagaaatcgggccgtga

Protein
Protein IDpfu_aug1.0_4493.1_66993.t1
Definition-
>pfu_aug1.0_4493.1_66993.t1
MAANSDEEQSLKECENYVQKHNVQQILKDCIVQLCINRPDNPIVFLREHFERLEKLSRKTNYGKEQEIGP

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