Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_4494.1_16418
Locus scaffold4494.1 : 17646 ... 25246 : +
To GenomeBrowser scaffold4494.1:17646..25246
Genes list of scaffold scaffold4494.1
Synonym pfu_aug2.0_601.1_04385

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_4494.1_16418.t1 1 1 Glyco_transf_8 16 99 9.7e-07 28.3 1.8e-10 1.3e-06 27.8

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_4494.1_16418.t1
Definition-
>pfu_aug1.0_4494.1_16418.t1
atgaaactgaagctgtatcacttgcactcttttcttctttcaggtgttaacactggtgtgttggtaatgaatcttacacg
attacgtgcaatagatttcccttccaagattgtggacctttataaaatatggtattctaaaattaagtggggagagcaag
atgtcgtcaacatttggcttcattataacccagaaaaactctacttgatttcttgtgaatggaatttccgaaatgatcat
tgtaacggtggaaacgcatgtaaaggtgcagaaaagaatggtattggcatactacatggtaatggtcaacagtatttgat
accagggaaaagaccagaattaatggcaatcaacgatgccttcctaaagtatttatcgagcgagaaccccaaagcagaca
ttgctgaggctgtgaaaaggaacttagcgaatgtgaggagagtcaccgactgtttaaaggctttaagatacatattccga
gacctcacactcccatga

Protein
Protein IDpfu_aug1.0_4494.1_16418.t1
Definition-
>pfu_aug1.0_4494.1_16418.t1
MKLKLYHLHSFLLSGVNTGVLVMNLTRLRAIDFPSKIVDLYKIWYSKIKWGEQDVVNIWLHYNPEKLYLISCEWNFRNDH
CNGGNACKGAEKNGIGILHGNGQQYLIPGKRPELMAINDAFLKYLSSENPKADIAEAVKRNLANVRRVTDCLKALRYIFR
DLTLP

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