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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_4501.1_23588
Locus scaffold4501.1 : 1 ... 2365 : -
To GenomeBrowser scaffold4501.1:1..2365
Genes list of scaffold scaffold4501.1
Synonym pfu_aug2.0_3349.1_32451

Manual annotation
Study fieldother
Gene namecalmodulin like
DescriptionBlast best hit to NCBI XP_789995.1 (Strongylocentrotus purpuratus)
mRNA evidence

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_4501.1_23588.t1 3 1 EF-hand_6 1 29 2.3e-18 64.3 1.7e-10 2.5e-07 30.0
pfu_aug1.0_4501.1_23588.t1 2 1 EF-hand_5 1 24 8.0e-14 50.2 4.1e-08 6.0e-05 22.1
pfu_aug1.0_4501.1_23588.t1 2 1 EF-hand_7 2 59 4.9e-21 74.6 4.9e-13 7.3e-10 38.8
pfu_aug1.0_4501.1_23588.t1 4 1 EF-hand_1 2 27 1.4e-18 64.6 1.8e-08 2.7e-05 23.1
pfu_aug1.0_4501.1_23588.t1 2 1 EF-hand_9 3 44 7.2e-06 25.8 6.5e-06 0.0096 15.8
pfu_aug1.0_4501.1_23588.t1 4 1 EF-hand_8 4 20 2.4e-11 43.0 0.0053 7.9 6.1
pfu_aug1.0_4501.1_23588.t1 4 2 EF-hand_8 24 43 2.4e-11 43.0 0.044 65.0 3.2
pfu_aug1.0_4501.1_23588.t1 4 2 EF-hand_1 46 62 1.4e-18 64.6 0.0017 2.5 7.5
pfu_aug1.0_4501.1_23588.t1 3 2 EF-hand_6 46 61 2.3e-18 64.3 0.024 36.0 4.6
pfu_aug1.0_4501.1_23588.t1 4 3 EF-hand_8 48 93 2.4e-11 43.0 3.9e-07 0.00058 19.4
pfu_aug1.0_4501.1_23588.t1 2 2 EF-hand_7 73 127 4.9e-21 74.6 2.7e-12 4.0e-09 36.4
pfu_aug1.0_4501.1_23588.t1 3 3 EF-hand_6 73 99 2.3e-18 64.3 1.1e-10 1.6e-07 30.5
pfu_aug1.0_4501.1_23588.t1 4 3 EF-hand_1 74 100 1.4e-18 64.6 2.5e-10 3.7e-07 28.9
pfu_aug1.0_4501.1_23588.t1 2 2 EF-hand_5 74 97 8.0e-14 50.2 1.6e-09 2.3e-06 26.6
pfu_aug1.0_4501.1_23588.t1 2 2 EF-hand_9 77 129 7.2e-06 25.8 0.0018 2.6 8.0
pfu_aug1.0_4501.1_23588.t1 4 4 EF-hand_8 86 118 2.4e-11 43.0 9.8e-09 1.5e-05 24.5
pfu_aug1.0_4501.1_23588.t1 4 4 EF-hand_1 109 127 1.4e-18 64.6 0.01 15.0 5.1

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_4501.1_23588.t1 gi|260796529|ref|XP_002593257.1| hypothetical protein BRAFLDRAFT_59748 [Branchiostoma floridae] 3.0e-33

Transcript
Transcript IDpfu_aug1.0_4501.1_23588.t1
Definition-
>pfu_aug1.0_4501.1_23588.t1
atgaaagaggtgtttagtcttttcgatcatgactgcgacggatttttagacattaaagaacttggaaaagttctgagatc
attcggactaaatccatcggaagcagaacttgaagagatgatcactgaatacgaagaagatgatggcaaaatggattttc
ctgaagtcatgaaaattttggccaagaagataaaagaaccaccagaaacagaagaatacctgcgtgaagcttttaggaca
ttcgataaagacggaagcggggtcataagtagaatagaacttcagcaaataatgagcaaccaaggggaaaaactttcaga
acacgaagttcaggaaatgatggctgatgcagatgatggcaaaggggaggtacattatgaagcctacatgtacgatgaga
tcatggtacaagtgtgcgttttaggaaacatctatgcatccggaaacattgaccttctcatgcggtttaaacat

Protein
Protein IDpfu_aug1.0_4501.1_23588.t1
Definition-
>pfu_aug1.0_4501.1_23588.t1
MKEVFSLFDHDCDGFLDIKELGKVLRSFGLNPSEAELEEMITEYEEDDGKMDFPEVMKILAKKIKEPPETEEYLREAFRT
FDKDGSGVISRIELQQIMSNQGEKLSEHEVQEMMADADDGKGEVHYEAYMYDEIMVQVCVLGNIYASGNIDLLMRFKH

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