Gene
Gene Model ID | pfu_aug1.0_4501.1_23588 |
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Locus | scaffold4501.1 : 1 ... 2365 : - |
To GenomeBrowser | scaffold4501.1:1..2365 |
Genes list of scaffold | scaffold4501.1 |
Synonym | pfu_aug2.0_3349.1_32451 |
Manual annotation
Study field | other |
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Gene name | calmodulin like |
Description | Blast best hit to NCBI XP_789995.1 (Strongylocentrotus purpuratus) |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4501.1_23588.t1 | 3 | 1 | EF-hand_6 | 1 | 29 | 2.3e-18 | 64.3 | 1.7e-10 | 2.5e-07 | 30.0 |
pfu_aug1.0_4501.1_23588.t1 | 2 | 1 | EF-hand_5 | 1 | 24 | 8.0e-14 | 50.2 | 4.1e-08 | 6.0e-05 | 22.1 |
pfu_aug1.0_4501.1_23588.t1 | 2 | 1 | EF-hand_7 | 2 | 59 | 4.9e-21 | 74.6 | 4.9e-13 | 7.3e-10 | 38.8 |
pfu_aug1.0_4501.1_23588.t1 | 4 | 1 | EF-hand_1 | 2 | 27 | 1.4e-18 | 64.6 | 1.8e-08 | 2.7e-05 | 23.1 |
pfu_aug1.0_4501.1_23588.t1 | 2 | 1 | EF-hand_9 | 3 | 44 | 7.2e-06 | 25.8 | 6.5e-06 | 0.0096 | 15.8 |
pfu_aug1.0_4501.1_23588.t1 | 4 | 1 | EF-hand_8 | 4 | 20 | 2.4e-11 | 43.0 | 0.0053 | 7.9 | 6.1 |
pfu_aug1.0_4501.1_23588.t1 | 4 | 2 | EF-hand_8 | 24 | 43 | 2.4e-11 | 43.0 | 0.044 | 65.0 | 3.2 |
pfu_aug1.0_4501.1_23588.t1 | 4 | 2 | EF-hand_1 | 46 | 62 | 1.4e-18 | 64.6 | 0.0017 | 2.5 | 7.5 |
pfu_aug1.0_4501.1_23588.t1 | 3 | 2 | EF-hand_6 | 46 | 61 | 2.3e-18 | 64.3 | 0.024 | 36.0 | 4.6 |
pfu_aug1.0_4501.1_23588.t1 | 4 | 3 | EF-hand_8 | 48 | 93 | 2.4e-11 | 43.0 | 3.9e-07 | 0.00058 | 19.4 |
pfu_aug1.0_4501.1_23588.t1 | 2 | 2 | EF-hand_7 | 73 | 127 | 4.9e-21 | 74.6 | 2.7e-12 | 4.0e-09 | 36.4 |
pfu_aug1.0_4501.1_23588.t1 | 3 | 3 | EF-hand_6 | 73 | 99 | 2.3e-18 | 64.3 | 1.1e-10 | 1.6e-07 | 30.5 |
pfu_aug1.0_4501.1_23588.t1 | 4 | 3 | EF-hand_1 | 74 | 100 | 1.4e-18 | 64.6 | 2.5e-10 | 3.7e-07 | 28.9 |
pfu_aug1.0_4501.1_23588.t1 | 2 | 2 | EF-hand_5 | 74 | 97 | 8.0e-14 | 50.2 | 1.6e-09 | 2.3e-06 | 26.6 |
pfu_aug1.0_4501.1_23588.t1 | 2 | 2 | EF-hand_9 | 77 | 129 | 7.2e-06 | 25.8 | 0.0018 | 2.6 | 8.0 |
pfu_aug1.0_4501.1_23588.t1 | 4 | 4 | EF-hand_8 | 86 | 118 | 2.4e-11 | 43.0 | 9.8e-09 | 1.5e-05 | 24.5 |
pfu_aug1.0_4501.1_23588.t1 | 4 | 4 | EF-hand_1 | 109 | 127 | 1.4e-18 | 64.6 | 0.01 | 15.0 | 5.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_4501.1_23588.t1 | gi|260796529|ref|XP_002593257.1| | hypothetical protein BRAFLDRAFT_59748 [Branchiostoma floridae] | 3.0e-33 |
Transcript
Transcript ID | pfu_aug1.0_4501.1_23588.t1 |
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Definition | - |
>pfu_aug1.0_4501.1_23588.t1 atgaaagaggtgtttagtcttttcgatcatgactgcgacggatttttagacattaaagaacttggaaaagttctgagatc attcggactaaatccatcggaagcagaacttgaagagatgatcactgaatacgaagaagatgatggcaaaatggattttc ctgaagtcatgaaaattttggccaagaagataaaagaaccaccagaaacagaagaatacctgcgtgaagcttttaggaca ttcgataaagacggaagcggggtcataagtagaatagaacttcagcaaataatgagcaaccaaggggaaaaactttcaga acacgaagttcaggaaatgatggctgatgcagatgatggcaaaggggaggtacattatgaagcctacatgtacgatgaga tcatggtacaagtgtgcgttttaggaaacatctatgcatccggaaacattgaccttctcatgcggtttaaacat |
Protein
Protein ID | pfu_aug1.0_4501.1_23588.t1 |
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Definition | - |
>pfu_aug1.0_4501.1_23588.t1 MKEVFSLFDHDCDGFLDIKELGKVLRSFGLNPSEAELEEMITEYEEDDGKMDFPEVMKILAKKIKEPPETEEYLREAFRT FDKDGSGVISRIELQQIMSNQGEKLSEHEVQEMMADADDGKGEVHYEAYMYDEIMVQVCVLGNIYASGNIDLLMRFKH |