Gene
| Gene Model ID | pfu_aug1.0_4525.1_08923 |
|---|---|
| Locus | scaffold4525.1 : 10786 ... 47458 : + |
| To GenomeBrowser | scaffold4525.1:10786..47458 |
| Genes list of scaffold | scaffold4525.1 |
| Synonym | pfu_aug2.0_21.1_03422 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4525.1_08923.t1 | 1 | 1 | CTNNB1_binding | 1 | 159 | 7.0e-18 | 65.6 | 1.4e-21 | 7.0e-18 | 65.6 |
| pfu_aug1.0_4525.1_08923.t1 | 1 | 1 | HMG_box | 260 | 297 | 1.4e-08 | 34.8 | 5.7e-12 | 2.8e-08 | 33.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4525.1_08923.t1 | gi|260802532|ref|XP_002596146.1| | hypothetical protein BRAFLDRAFT_66125 [Branchiostoma floridae] | 2.0e-39 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_4525.1_08923.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4525.1_08923.t1 atgccgcatgtgaactctggcggctctgaagactttttctcaaacgatgaagtgaaagtttacaaagatgaaggcgagga agagcagagatcttcggaaaatttatcagaggataagctcggtctagttaccgaaacagaggagggtaaaagtaatggaa ttggtagtaatttccatgggaatgagaaatcagacggttccagatccgacgatggtaaaagtggacaggcccaggacagg agtagtggtcagtttggttatgtaccaccgtacccacactatcctaatggatcttctcccttgggcagcaaattccagcc tcccatgagcggtctgatgatgtataataatgaaccgtttgcccaaccccctccggcacacatgggtattccgccagttc atatagaccccaaaacaggtctcccccggccctccatgtatgcgtaccctccccccggacagttccctcctagtctatac agtccagacctatcacaagtgcaatggcgtggcccacattatcccatttcctcaggggccttctcaggggcagcttatcc accctcattagtcaactcatcaccattatcacgttttgggcccccagggctctttccacctcccggtcttcatcctggca tgccccacccaggcttgatgtccccaggaagcaagccagagggcgccatctcagcacatagtcaagatagaaatatgcta gatcaaggcagcaatagtaattctgggaatccaccagaagacaaaaagaaaaatcatataaagaaacctttaaatgcctt catgctttttatgaaagaagtgcgagcccaagttgttgcagaatgtacattaaaagaatctgcggctataaaccaaattt taggcagacgagtaagtaaatgttccatttatgatacagtaagtaaatgtgtgtctgtatttttttttgcagagatgatt tag |
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Protein
| Protein ID | pfu_aug1.0_4525.1_08923.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4525.1_08923.t1 MPHVNSGGSEDFFSNDEVKVYKDEGEEEQRSSENLSEDKLGLVTETEEGKSNGIGSNFHGNEKSDGSRSDDGKSGQAQDR SSGQFGYVPPYPHYPNGSSPLGSKFQPPMSGLMMYNNEPFAQPPPAHMGIPPVHIDPKTGLPRPSMYAYPPPGQFPPSLY SPDLSQVQWRGPHYPISSGAFSGAAYPPSLVNSSPLSRFGPPGLFPPPGLHPGMPHPGLMSPGSKPEGAISAHSQDRNML DQGSNSNSGNPPEDKKKNHIKKPLNAFMLFMKEVRAQVVAECTLKESAAINQILGRRVSKCSIYDTVSKCVSVFFFAEMI |
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