Gene
| Gene Model ID | pfu_aug1.0_4534.1_01757 |
|---|---|
| Locus | scaffold4534.1 : 1 ... 15455 : - |
| To GenomeBrowser | scaffold4534.1:1..15455 |
| Genes list of scaffold | scaffold4534.1 |
| Synonym | pfu_aug2.0_10924.1_16437 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4534.1_01757.t1 | 1 | 1 | CPSase_sm_chain | 1 | 107 | 1.9e-35 | 121.2 | 3.5e-38 | 5.2e-35 | 119.8 |
| pfu_aug1.0_4534.1_01757.t1 | 2 | 1 | CPSase_L_chain | 129 | 224 | 4.2e-37 | 126.6 | 2.1e-18 | 3.1e-15 | 56.2 |
| pfu_aug1.0_4534.1_01757.t1 | 2 | 1 | ATPgrasp_Ter | 162 | 279 | 2.3e-07 | 29.8 | 0.0015 | 2.3 | 6.8 |
| pfu_aug1.0_4534.1_01757.t1 | 2 | 1 | CPSase_L_D2 | 229 | 331 | 0.0 | 181.7 | 2.8e-35 | 4.1e-32 | 111.1 |
| pfu_aug1.0_4534.1_01757.t1 | 2 | 1 | ATP-grasp | 243 | 324 | 4.0e-13 | 49.0 | 0.00072 | 1.1 | 8.6 |
| pfu_aug1.0_4534.1_01757.t1 | 2 | 1 | ATP-grasp_4 | 244 | 330 | 3.7e-21 | 75.6 | 0.00012 | 0.18 | 11.5 |
| pfu_aug1.0_4534.1_01757.t1 | 2 | 1 | RimK | 248 | 306 | 1.4e-08 | 34.4 | 0.009 | 13.0 | 5.1 |
| pfu_aug1.0_4534.1_01757.t1 | 3 | 1 | Dala_Dala_lig_C | 249 | 322 | 3.7e-15 | 55.8 | 1.1e-07 | 0.00016 | 21.0 |
| pfu_aug1.0_4534.1_01757.t1 | 3 | 2 | Dala_Dala_lig_C | 331 | 375 | 3.7e-15 | 55.8 | 0.91 | 1300.0 | -1.5 |
| pfu_aug1.0_4534.1_01757.t1 | 1 | 1 | CPSase_L_D3 | 381 | 505 | 2.5e-39 | 133.8 | 3.89981e-42 | 5.7e-39 | 132.6 |
| pfu_aug1.0_4534.1_01757.t1 | 2 | 2 | CPSase_L_chain | 519 | 626 | 4.2e-37 | 126.6 | 6.1e-22 | 9.1e-19 | 67.5 |
| pfu_aug1.0_4534.1_01757.t1 | 2 | 2 | ATPgrasp_Ter | 616 | 747 | 2.3e-07 | 29.8 | 1.6e-07 | 0.00024 | 19.9 |
| pfu_aug1.0_4534.1_01757.t1 | 2 | 2 | RimK | 629 | 732 | 1.4e-08 | 34.4 | 1.9e-09 | 2.8e-06 | 26.9 |
| pfu_aug1.0_4534.1_01757.t1 | 2 | 2 | ATP-grasp_4 | 630 | 788 | 3.7e-21 | 75.6 | 3.9e-20 | 5.8e-17 | 62.0 |
| pfu_aug1.0_4534.1_01757.t1 | 2 | 2 | CPSase_L_D2 | 633 | 788 | 0.0 | 181.7 | 3.1e-22 | 4.6e-19 | 68.5 |
| pfu_aug1.0_4534.1_01757.t1 | 2 | 2 | ATP-grasp | 640 | 786 | 4.0e-13 | 49.0 | 1.1e-12 | 1.6e-09 | 37.3 |
| pfu_aug1.0_4534.1_01757.t1 | 3 | 3 | Dala_Dala_lig_C | 644 | 781 | 3.7e-15 | 55.8 | 7.2e-11 | 1.1e-07 | 31.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4534.1_01757.t1 | gi|260829361|ref|XP_002609630.1| | hypothetical protein BRAFLDRAFT_83617 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_4534.1_01757.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4534.1_01757.t1 atggttggctacccagagtccatgacggacccctcctacagaaaacagatccttatcctgacgtaccccctcatagggaa ttatgggatacctgataataaaaccgacaaatacggcctccaggaatggtttgaatcggcagaaattcacacggcaggac ttataatcggggatctgtcggaaaatcatagtcactggagctctgtcaagtctctctctgattggctacaggaatatgac atcccagccttgtatgggttggatacaagggctctaacgaagaaaatcagagaaaatggcacaatgctgggaaagattgt ggttgatgagacagaccctcaaagcattccacttactgatcccaacaagctgcatctggtggcagaagtgtccatcaagg caatcaaagctctgaaggaagagggaatacagacgatactcataaatcctaacatagcgacagtacagacatcaaaagga ttggctgataaagtcttctttctgccaattacgttagaatacgtcacacagatcatcagaagtgagaggcctaacggtat actactgacattcggtggtcaaacagcattgaactgtggagttcagctaacgaagacaggcgtgttagagaagttcaatg tccgagtgctcggaactcaggtcaggtcgatagaatggacggaggatcggaaggtgtttgccgacaaaatgttagagatc aacgaacacgtggcacctagtgaggctgcctacacagtggaacaggcagttgctgctgcagaaaggctaggctatcctgt acttatcagagcggctttcgctttaggcgggcttgggtccggttttgctgacaatcgggaacagttacttaccctcgtta acggagcgttcgcccacactagccaggtcctgatagacaagtcattgaaaggttggaaggaagtggagtatgaagtgatc agagatgcctatgataactgtattacgtccttcgttcgatttgtgcagatagggagttccatgaagagtgtaggagaggt gatggccattggcaggaagtttgaggaggcgtttcagaaagctcttcgtatgatggacgaaaatatagtaggatttgatc cctacacagcggaagtttccgaggaggaattacgtgacccgactgatcgtagaatgtttgtgttggcccgagcgttgaag gaaggatacagtatagataagctgtacgaacttactaagatcgacagatggttcctacacaagttcaagaacataacgga tcatctgtctgcgttggaagtatttagagggaagatgggtcaggttgcgacagaaatgttgataaaggccaaacaactag gattttgtgacgaacaaatagccagggctgtagaaagcacacatttagtagtacgcaaggttcgatacaagctcggaatc tgtccccacatcaaacagatagatacagtagcagcagaatggccggcccagacaaactatttatacctgacgtacaacgg agacacggacgatttaacattcccaggcggctatgtcatggtcattgggtcaggagtgtacaggataggaagtagtgtag aatttgattggtgtgcggtcaagtgtatcacagaactcagaaaaatgggttacaagacaataatggtgaactataaccct gagacagtcagtacagattatgatatgtgcgacagactttacttcgatgaaatctcatttgagaccgtgatggacatcta caatttggagaaaccagatggcgttatattatctatgggcggacaactccctaataacattgccatgcagcttcacagac aacaggccaaagtattggggacatcaccagagtgtattgattcggcagaaaatcgcttcaagttttcccgtatgctcgac aatatgaacatagaacagccaaggtggaaggaactctcagatgtggagacagccaaagagttctgtgaggaggttgggta cccttgtcttgtacggccatcctatgtactcagtggggctgccatgaacgtagctcacagtcaccaggatctggaggact atctgaaccaggccagcgccgtgtccaaggaatgtccagtcgttatatctaaatttatcctggaggccaaggaaattgac gtagatgttgtggcgagtgatggggaggtgttatgtatggccgtatcggagcatatagagaatgccggggtacactcagg agacgctagtcttgtgaccccaccccaggatcttaacgaggagacgctggccaaaattagggctatttgttgtgccatag ggagagcgttagaagttaccggtccattcaatttgcagcttattgctaaggtatcgttttgtgtgtaa |
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Protein
| Protein ID | pfu_aug1.0_4534.1_01757.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4534.1_01757.t1 MVGYPESMTDPSYRKQILILTYPLIGNYGIPDNKTDKYGLQEWFESAEIHTAGLIIGDLSENHSHWSSVKSLSDWLQEYD IPALYGLDTRALTKKIRENGTMLGKIVVDETDPQSIPLTDPNKLHLVAEVSIKAIKALKEEGIQTILINPNIATVQTSKG LADKVFFLPITLEYVTQIIRSERPNGILLTFGGQTALNCGVQLTKTGVLEKFNVRVLGTQVRSIEWTEDRKVFADKMLEI NEHVAPSEAAYTVEQAVAAAERLGYPVLIRAAFALGGLGSGFADNREQLLTLVNGAFAHTSQVLIDKSLKGWKEVEYEVI RDAYDNCITSFVRFVQIGSSMKSVGEVMAIGRKFEEAFQKALRMMDENIVGFDPYTAEVSEEELRDPTDRRMFVLARALK EGYSIDKLYELTKIDRWFLHKFKNITDHLSALEVFRGKMGQVATEMLIKAKQLGFCDEQIARAVESTHLVVRKVRYKLGI CPHIKQIDTVAAEWPAQTNYLYLTYNGDTDDLTFPGGYVMVIGSGVYRIGSSVEFDWCAVKCITELRKMGYKTIMVNYNP ETVSTDYDMCDRLYFDEISFETVMDIYNLEKPDGVILSMGGQLPNNIAMQLHRQQAKVLGTSPECIDSAENRFKFSRMLD NMNIEQPRWKELSDVETAKEFCEEVGYPCLVRPSYVLSGAAMNVAHSHQDLEDYLNQASAVSKECPVVISKFILEAKEID VDVVASDGEVLCMAVSEHIENAGVHSGDASLVTPPQDLNEETLAKIRAICCAIGRALEVTGPFNLQLIAKVSFCV |
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