Gene
Gene Model ID | pfu_aug1.0_4555.1_08937 |
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Locus | scaffold4555.1 : 37136 ... 46115 : - |
To GenomeBrowser | scaffold4555.1:37136..46115 |
Genes list of scaffold | scaffold4555.1 |
Synonym | pfu_aug2.0_241.1_03853 |
Manual annotation
Study field | Environmental Response |
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Gene name | G-protein coupled receptor |
Description | Similar (46%) to CAB77263.1| G-protein coupled receptor [Lymnaea stagnalis |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4555.1_08937.t1 | 1 | 1 | 7TM_GPCR_Srsx | 125 | 398 | 5.9e-09 | 35.4 | 1.0e-12 | 7.7e-09 | 35.0 |
pfu_aug1.0_4555.1_08937.t1 | 1 | 1 | 7tm_1 | 130 | 384 | 0.0 | 186.9 | 0.0 | 0.0 | 186.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_4555.1_08937.t1 | gi|7242704|emb|CAB77263.1| | G-protein coupled receptor [Lymnaea stagnalis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_4555.1_08937.t1 |
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Definition | - |
>pfu_aug1.0_4555.1_08937.t1 atggaggtgtcggagcgggacaagaatttggctaaaaatacggggagatatggactaagaagacatttggaatcagctcc gcagtcaaaagcggaatgccgcttaaccaactttaaacccccgcccagccaacgctcgcatgcacagaacgccgctccat atgctcgcgtcaccgctaaaccaacgctggctgtcatcagtgaattttttgaggacttcaaagtttgcaaaagtatgtgt tactttgaaaatggaaactttacaaactgtagtttaagtccggatgaagattacgaccaggagtacaaagaagcgctatc ggtagaaagtgtaacaaaaatcgtagttcctacactttttgcaattttcttccttctcggaatagcgggaaatgccttgg ttttgaaagtacttgtatcgcacaaacacatgcaaaataccaccaacatcttactcggaagtcttgcccttacggattta cttttcattgtgttatgtgtgccatatacggcgatagaattcgccatgacacaatggatgtttggtcgaatatggtgcaa agtttctcaatattttatttctgtgacggcatgtgccagtatatggactcttgtactaatttctgtatccagatatcgcg ctattttacaccccatcgcaaatttgaagatgcggagtcggaggaacacatatcttgtgctctgttgtctttggttgatt gtgctcgtcggaaacgtacccacattgttcatgttcgatgaattgaactatatatacatcatcgaggtaagatctacttg tctaacactgaacacctttcacaataagatattttatacgtgcttctttgtgtttggttttgtacttccgctggcgatca tatgtccattgtacggtatgattctacggaaactaatctacagcgttggacccggagattacaaaaactcaaaagtcatt cagtctaaattaaaagtttcacgcatgatctgcatagttgtgatcgtatttgcgatatgctggttgccaattgacttgat tttacttatacaaagtttcacgagctttgaaccaacgaaagcaacgacggccattttgattacagcgaactgtatggctt acatcaacagttgcattaatcccatattgtatggattcctatccaaaaatttccggaagagctatcggaaccttctgtgc tgttttgcaagacggtcatctaaagttcgttttgagatgagaaatttcagatcgctgacaatgcatgatcgctttaatag cacagcatcaacccgccttgacaggaatgtcaccccggaccggctaaacagttgtgatattaaaagacaagaaaggatgg ggattctttcataa |
Protein
Protein ID | pfu_aug1.0_4555.1_08937.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4555.1_08937.t1 MEVSERDKNLAKNTGRYGLRRHLESAPQSKAECRLTNFKPPPSQRSHAQNAAPYARVTAKPTLAVISEFFEDFKVCKSMC YFENGNFTNCSLSPDEDYDQEYKEALSVESVTKIVVPTLFAIFFLLGIAGNALVLKVLVSHKHMQNTTNILLGSLALTDL LFIVLCVPYTAIEFAMTQWMFGRIWCKVSQYFISVTACASIWTLVLISVSRYRAILHPIANLKMRSRRNTYLVLCCLWLI VLVGNVPTLFMFDELNYIYIIEVRSTCLTLNTFHNKIFYTCFFVFGFVLPLAIICPLYGMILRKLIYSVGPGDYKNSKVI QSKLKVSRMICIVVIVFAICWLPIDLILLIQSFTSFEPTKATTAILITANCMAYINSCINPILYGFLSKNFRKSYRNLLC CFARRSSKVRFEMRNFRSLTMHDRFNSTASTRLDRNVTPDRLNSCDIKRQERMGILS |