Gene
| Gene Model ID | pfu_aug1.0_456.1_43681 |
|---|---|
| Locus | scaffold456.1 : 93736 ... 113314 : + |
| To GenomeBrowser | scaffold456.1:93736..113314 |
| Genes list of scaffold | scaffold456.1 |
| Synonym | pfu_aug2.0_8.1_26636 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_456.1_43681.t1 | 1 | 1 | DCP1 | 35 | 102 | 2.7e-19 | 69.4 | 6.6e-23 | 4.9e-19 | 68.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_456.1_43681.t1 | gi|260814934|ref|XP_002602168.1| | hypothetical protein BRAFLDRAFT_97984 [Branchiostoma floridae] | 3.99931e-42 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_456.1_43681.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_456.1_43681.t1 atgatgtttgtactttattcaataaacatagttcgcctctatccttttacatcgaacatctggaaacgcacagcagctat tttcaatgcagacaataaacttaaatggtcagcatcaccagataatggtttcatgatcctgaacagactagggctaaaca atcttatagaaccaatcaccaaggacctggagttccagcttcaagatccttttcttctgtacagaaatgctaaagttata catggaatatggttctatgataaggatgaatgtgccaggatcgggcagttgatgaatagccttttacagcttgcactaga gcattacagagagaatcgtcaacgaagagtttccgagtcagacagtgtacaggagaaaactgagatggtatcagcaggag taaaaaatgtagacatcctacagatgttgtccaaggctcaggatgagtatgataaggctaaaagtggagtacctcccaag ccattcatagacaatcctaatgcctcagctatgaagtcctcagagatacaccgaccaaaaccactcaaagccagcaatga cgatgatggtaggtatagcaatgacgatgatgatactacagatcaggatagcaatcagaatgcgtcctcttcagcagcag cagctcctataagtttagagacactgttcagaaatgctagtcttcaacagcaaaaacagcaaggagaaaaaccagaagtc aaaaaaggtcccgtagaagggaaatccaaagctgtacacgtagaggagaaacttcccgtggcagctctgactaaggacca actacaacaagcattgcttcatctcatcaaggtgttcatttcaagaagagtgtgctctgaaaatgatgattggaaaagaa ttacaatgtactatgagaaagatattttttacaaatctttctgtcttagaaaagtttatgtacatgtattgatagaaaaa ttcctctgtaacaacagttatgttgaggagtactga |
|
Protein
| Protein ID | pfu_aug1.0_456.1_43681.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_456.1_43681.t1 MMFVLYSINIVRLYPFTSNIWKRTAAIFNADNKLKWSASPDNGFMILNRLGLNNLIEPITKDLEFQLQDPFLLYRNAKVI HGIWFYDKDECARIGQLMNSLLQLALEHYRENRQRRVSESDSVQEKTEMVSAGVKNVDILQMLSKAQDEYDKAKSGVPPK PFIDNPNASAMKSSEIHRPKPLKASNDDDGRYSNDDDDTTDQDSNQNASSSAAAAPISLETLFRNASLQQQKQQGEKPEV KKGPVEGKSKAVHVEEKLPVAALTKDQLQQALLHLIKVFISRRVCSENDDWKRITMYYEKDIFYKSFCLRKVYVHVLIEK FLCNNSYVEEY |
|