Gene
| Gene Model ID | pfu_aug1.0_4564.1_08938 |
|---|---|
| Locus | scaffold4564.1 : 5868 ... 22025 : - |
| To GenomeBrowser | scaffold4564.1:5868..22025 |
| Genes list of scaffold | scaffold4564.1 |
| Synonym | pfu_aug2.0_1847.1_25174 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4564.1_08938.t1 | 1 | 1 | Proteasome_A_N | 9 | 31 | 1.2e-14 | 53.2 | 2.8e-18 | 2.1e-14 | 52.5 |
| pfu_aug1.0_4564.1_08938.t1 | 1 | 1 | Proteasome | 34 | 209 | 0.0 | 167.9 | 0.0 | 0.0 | 167.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4564.1_08938.t1 | gi|260831346|ref|XP_002610620.1| | hypothetical protein BRAFLDRAFT_260512 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4564.1_08938.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4564.1_08938.t1 atgtccagaggaagcagtgctggatttgatagacatattactattttctctccagagggacgcctttatcaagtcgaata tgcattcaaagctattaatcaagggggactcacatctgtggccatcaggggaaaagactgtgcagttgttgtaacacaga aaaaagtgccagacaagctgttagatgctggtacagtcacacatttgttccgactcacggagaatcttggatgtgtaatg acagggatggtcgccgacagtcgatctcaggtgcagcgagccaggtatgaggcagccaagtggaagtacaattatggtta cgagatccccgtagatatactgtgtaaaaggatagcggatatatctcaggtctacactcagagtgcagagatgagacctt tgggttgtagtatgattgtcatcggttacgaccctgaatacggtcctcaggtatacaagaccgacccagcaggttattac tgtgggttcaaggccacgtcagccggggtcaaacagctagaggccaatagtttcttagaaaagaaagtaaaaaagaagca agatttcacttataatgaggctgtggaggtaaactttgtctttcttaagtatataatcttcatggatgtattttcttgtt atttgatagtttaa |
|
Protein
| Protein ID | pfu_aug1.0_4564.1_08938.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4564.1_08938.t1 MSRGSSAGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAIRGKDCAVVVTQKKVPDKLLDAGTVTHLFRLTENLGCVM TGMVADSRSQVQRARYEAAKWKYNYGYEIPVDILCKRIADISQVYTQSAEMRPLGCSMIVIGYDPEYGPQVYKTDPAGYY CGFKATSAGVKQLEANSFLEKKVKKKQDFTYNEAVEVNFVFLKYIIFMDVFSCYLIV |
|