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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_45707.1_48602
Locus scaffold45707.1 : 1 ... 21233 : +
To GenomeBrowser scaffold45707.1:1..21233
Genes list of scaffold scaffold45707.1
Synonym pfu_aug2.0_156.1_20344

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_45707.1_48602.t1 3 1 Kelch_3 5 18 3.2e-13 49.4 0.0012 3.0 8.1
pfu_aug1.0_45707.1_48602.t1 2 1 Kelch_5 7 45 2.5e-08 33.6 2.6e-09 6.5e-06 25.9
pfu_aug1.0_45707.1_48602.t1 2 1 Kelch_4 11 54 2.1e-17 62.6 9.6e-14 2.4e-10 40.0
pfu_aug1.0_45707.1_48602.t1 2 1 Kelch_6 12 53 5.0e-06 26.4 3.2e-07 0.00079 19.5
pfu_aug1.0_45707.1_48602.t1 2 1 Kelch_1 20 54 2.1e-06 27.1 4.0e-07 0.00099 18.6
pfu_aug1.0_45707.1_48602.t1 3 2 Kelch_3 22 69 3.2e-13 49.4 5.3e-12 1.3e-08 34.7
pfu_aug1.0_45707.1_48602.t1 2 2 Kelch_4 61 84 2.1e-17 62.6 8.4e-08 0.00021 21.0
pfu_aug1.0_45707.1_48602.t1 2 2 Kelch_5 61 82 2.5e-08 33.6 0.006 15.0 5.6
pfu_aug1.0_45707.1_48602.t1 2 2 Kelch_6 65 80 5.0e-06 26.4 0.012 30.0 5.0
pfu_aug1.0_45707.1_48602.t1 2 2 Kelch_1 66 87 2.1e-06 27.1 0.0019 4.8 6.8
pfu_aug1.0_45707.1_48602.t1 3 3 Kelch_3 74 82 3.2e-13 49.4 0.033 83.0 3.5

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_45707.1_48602.t1 gi|110645840|gb|AAI19568.1| Kelch domain containing 1 [Mus musculus] 3.0e-23

Transcript
Transcript IDpfu_aug1.0_45707.1_48602.t1
Definition-
>pfu_aug1.0_45707.1_48602.t1
attgacaacagagggtaacataccagagggtcgttcatggcattccctttctgcactggacgatggtcgtctgtttatgt
atggtggatttaacactagctgccagcctctcagtgatgcttggacccttgaccttttgaccttacaatggagccagctg
aagcatgtacctggtgatcgtccccgtctctggcataccgcctgcgtcacaccgtcacaggaagtggtcattcatggagg
atgctccaacaatattcttgattaccaaatacaaacagaacatcgtagtgatgtgatacatatacagacacagccttact
cacttctcagatag

Protein
Protein IDpfu_aug1.0_45707.1_48602.t1
Definition-
>pfu_aug1.0_45707.1_48602.t1
LTTEGNIPEGRSWHSLSALDDGRLFMYGGFNTSCQPLSDAWTLDLLTLQWSQLKHVPGDRPRLWHTACVTPSQEVVIHGG
CSNNILDYQIQTEHRSDVIHIQTQPYSLLR

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