Gene
| Gene Model ID | pfu_aug1.0_4599.1_59551 |
|---|---|
| Locus | scaffold4599.1 : 3741 ... 12995 : - |
| To GenomeBrowser | scaffold4599.1:3741..12995 |
| Genes list of scaffold | scaffold4599.1 |
| Synonym | pfu_aug2.0_554.1_14305 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4599.1_59551.t1 | 2 | 1 | TFIIS_C | 13 | 24 | 1.5e-11 | 43.6 | 0.054 | 120.0 | 2.4 |
| pfu_aug1.0_4599.1_59551.t1 | 2 | 2 | TFIIS_C | 63 | 103 | 1.5e-11 | 43.6 | 1.0e-14 | 2.2e-11 | 43.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4599.1_59551.t1 | gi|291221415|ref|XP_002730714.1| | PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like [Saccoglossus kowalevskii] | 1.0e-37 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 2 |
| 8-16cell | 2 |
| egg-Dshape | 2 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 2 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4599.1_59551.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4599.1_59551.t1 atggaattccggaattttcgaaagaaaatcgtctcaactctcgcttcaaattgccgtaactgtgattaccaacaggttgc tgataatccctgcatttacgtcaacaaaatcacacatgaagtcgatgagttaacccagattataggagacgtgattgccg accctacgttaccgaggacagaggatcatccatgtcctaagtgtgcccacaaagagtctgtcttcttccagagccacagt acaaaagctgaggagggaatgcggttgtattatgtatgtacaaattctcagtgtgtacacagatggacagaaaaactctc atga |
|
Protein
| Protein ID | pfu_aug1.0_4599.1_59551.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4599.1_59551.t1 MEFRNFRKKIVSTLASNCRNCDYQQVADNPCIYVNKITHEVDELTQIIGDVIADPTLPRTEDHPCPKCAHKESVFFQSHS TKAEEGMRLYYVCTNSQCVHRWTEKLS |
|