Gene
| Gene Model ID | pfu_aug1.0_46037.1_05345 |
|---|---|
| Locus | scaffold46037.1 : 1 ... 4015 : - |
| To GenomeBrowser | scaffold46037.1:1..4015 |
| Genes list of scaffold | scaffold46037.1 |
| Synonym | pfu_aug2.0_37.1_23311 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | beta-actin |
| Description | It is the best hit to the FJ611947.1 Octopus vulgaris actin mRNA, complete cds |
| mRNA evidence |
| Study field | Biomineralization |
|---|---|
| Gene name | actin |
| Description | Actin partial sequence. BlASTP top hit to AB071191(Crassostrea gigas). The amino acid sequence lacks N-terminal region of 44 amino acids compared with other actin sequences. |
| mRNA evidence |
| Study field | Biomineralization |
|---|---|
| Gene name | actin |
| Description | Actin partial sequence. BlASTP top hit to AB071191(Crassostrea gigas). The amino acid sequence lacks N-terminal region of 44 amino acids compared with other actin sequences. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_46037.1_05345.t1 | 1 | 1 | Actin | 7 | 332 | 0.0 | 478.9 | 0.0 | 0.0 | 478.6 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 7 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 2 |
| adductorMuscle | 26 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_46037.1_05345.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_46037.1_05345.t1 atggttggtatgggacagaaagacagctacgtcggagatgaagcccagagcaagagaggtatcctgaccctgaagtaccc cattgaacacggtatcgtcacaaactgggatgatatggagaagatctggcatcacactttctacaacgaactccgtgtcg cacccgaagagcaccccgtcctcctcactgaagcccccctcaaccccaaggctaacagggaaaagatgacccaaatcatg tttgaaaccttcaacgcccccgccatgtacgtagccatccaggccgtgctctccctgtacgcttctggtcgtaccactgg tatcgtgctcgactccggagacggtgtcacccacactgtaccaatctacgaaggttacgccctcccccacgccatcctcc gtcttgacttggccggtcgtgatcttactgactacctcatgaagatcctcaccgagcgtggttactcattcacaaccacc gccgaaagagaaatcgtcagagacattaaggaaaaactctgctacgtcgccctcgacttcgagcaggaaatggccaccgc cgcttcctcctcctccctcgagaagagctacgagcttcccgacggtcaggtcatcaccatcggtaacgagagattccgtt gcccagaatccctattccagccatccttcttgggtatggaatctgctggtatccatgaaaccacatacaacagcatcatg aaatgcgacgtcgacatccgtaaggatctgtacgccaacactgtattgtccggcggtaccaccatgttcccaggtattgc tgaccgtatgcagaaggaaatcaccgcacttgctccaagcacaatgaaaatcaagatcattgctccaccagagaggaaat actccgtctggatcggaggctccatccttgcttccctctccaccttccaacagatgtggatcagcaagcaggaatacgat gaatccggtccatccattgtccacaggaaatgcttctaa |
|
Protein
| Protein ID | pfu_aug1.0_46037.1_05345.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_46037.1_05345.t1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIM FETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTT AEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPESLFQPSFLGMESAGIHETTYNSIM KCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYD ESGPSIVHRKCF |
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