Gene
| Gene Model ID | pfu_aug1.0_4615.1_16446 |
|---|---|
| Locus | scaffold4615.1 : 12836 ... 35347 : + |
| To GenomeBrowser | scaffold4615.1:12836..35347 |
| Genes list of scaffold | scaffold4615.1 |
| Synonym | pfu_aug2.0_56.1_20126 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4615.1_16446.t1 | 1 | 1 | WWE | 40 | 105 | 3.2e-21 | 74.4 | 1.1e-24 | 8.2e-21 | 73.2 |
| pfu_aug1.0_4615.1_16446.t1 | 1 | 1 | HECT | 353 | 708 | 0.0 | 309.1 | 0.0 | 0.0 | 308.7 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_4615.1_16446.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4615.1_16446.t1 atgcatcggatgcagcatctggcctacattttccgggagctgatgccaaagttgccgtcagatgggatgtttgctataga tactatgttaaggaagggatctaccactcagatagatgctgtagtctggcagtggagagatgatcggggaatctggcatt catatacaccaatcgacagcaaaattatagaggctgcccatcaagcaggggaggatgaggtcagtttaaacaccatgggt cgtgtatacaccatcgacttcaactccctacagcaaatcaatgaggacacaggcactgcccgtggtgtacagagaaaggt caactccttggtaacgacttcagtaccatccacctcacagccagctgcttcaaaagatggtaaatctggtgcttcatcta aaatgtctttcctgccgagcttgaatccacgttcctggggaaagtttgccagttctgggtcatcagacaggtccagcggg tctaaagtcggactgtctaaggatggagatgatgatctcagtgatgatgataattcagatgatgatatagacgacacaat ggctgcagtgttcataagtcagggtacagccagacataagttagagttcctgattggagagaggatcttgccctacaata tgaccgtttaccaggccgtcaaaaactacagtaaccctggagagagggatgccagcgagacggacacggactctgagaat ccactaggacatgctagtatatgggtacagactcatacaatatgccctttcttgtttccctttgatactcggcaactcct gttctatgccacaacatttgacagagaccgagctttgatgcgacttcaggataacactggtgacacaagtattaacgaca atagtgagagagtggctccgaggctggatagaaggaggaaaatggtcagcagaacagatttgttgaaacaagcagagaaa gtaatggaagatctgggtaactccagggcgcttctggaaattcagtatgaaaatgaggtagggacaggtttaggacctac actggagttttacgccctgacatcaaaggaactacagaggggagatctagaactgtggagaggtgatactatatcagaga aaaattcatctggtacagttacagatacccagtattatcactcggctacgggtctcttccctgctccactaccacgtaat gctaaggcagctactgtgaataaggtcaaagccaagtttaaattcctaggaaagtttatggctaaagctctaatggactc taggatgttggacatgcccctttgccttgtattttacaagtggatattaggacaggaacacagtttgacgtccagtgatt tacagtacattgaccctgtgatagcaaagtctttccagcagttagaagatgttcttcgtcagaaacaaagaattttagcg gataaatctcatactgaggagagtcggcagttggcattagacagcctgactatggatggcagcaatatagaagacctaga tctggactttacgttacctggacatcctaatatagaactgaagaaaaacggcaaagacatcttagtcactctggaaaacc tggaggaatacctacagctggtggtacattggagtttagtagagagtgtttcccgtcagttcgaggcattacgagaagga tttgaggcaatatttccactgagtactctacagagcttttacccagaagaactggagcaattgttctgtgggaacataac agagacttgggacgttaagatgttaatggaatgttgtcgaccagatcatgggtatactcatgacagccgagctgttaaat tcctctttgagatacttagtttgtatgacgactcacaacaacgagagttcctacagttcgtaacgggatcccctcggcta cctgtgggcggtttcagaagtttaaatccacctctaaccattgtaagaaaatcctttgaaacaacggagaatcctgacaa ttttttaccgtctgtgatgacatgtgtgaattatctgaaactaccggactacacctctgtagaagtgatgcgcgagaaac tggcggtagcttccagggagggacaactctcctttcacttgtcatag |
|
Protein
| Protein ID | pfu_aug1.0_4615.1_16446.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4615.1_16446.t1 MHRMQHLAYIFRELMPKLPSDGMFAIDTMLRKGSTTQIDAVVWQWRDDRGIWHSYTPIDSKIIEAAHQAGEDEVSLNTMG RVYTIDFNSLQQINEDTGTARGVQRKVNSLVTTSVPSTSQPAASKDGKSGASSKMSFLPSLNPRSWGKFASSGSSDRSSG SKVGLSKDGDDDLSDDDNSDDDIDDTMAAVFISQGTARHKLEFLIGERILPYNMTVYQAVKNYSNPGERDASETDTDSEN PLGHASIWVQTHTICPFLFPFDTRQLLFYATTFDRDRALMRLQDNTGDTSINDNSERVAPRLDRRRKMVSRTDLLKQAEK VMEDLGNSRALLEIQYENEVGTGLGPTLEFYALTSKELQRGDLELWRGDTISEKNSSGTVTDTQYYHSATGLFPAPLPRN AKAATVNKVKAKFKFLGKFMAKALMDSRMLDMPLCLVFYKWILGQEHSLTSSDLQYIDPVIAKSFQQLEDVLRQKQRILA DKSHTEESRQLALDSLTMDGSNIEDLDLDFTLPGHPNIELKKNGKDILVTLENLEEYLQLVVHWSLVESVSRQFEALREG FEAIFPLSTLQSFYPEELEQLFCGNITETWDVKMLMECCRPDHGYTHDSRAVKFLFEILSLYDDSQQREFLQFVTGSPRL PVGGFRSLNPPLTIVRKSFETTENPDNFLPSVMTCVNYLKLPDYTSVEVMREKLAVASREGQLSFHLS |
|