Gene
| Gene Model ID | pfu_aug1.0_4619.1_44987 |
|---|---|
| Locus | scaffold4619.1 : 29732 ... 47465 : - |
| To GenomeBrowser | scaffold4619.1:29732..47465 |
| Genes list of scaffold | scaffold4619.1 |
| Synonym | pfu_aug2.0_529.1_30872 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4619.1_44987.t1 | 1 | 1 | BTB | 25 | 123 | 2.2e-13 | 50.1 | 2.1e-16 | 3.9e-13 | 49.3 |
| pfu_aug1.0_4619.1_44987.t1 | 3 | 1 | zf-H2C2_2 | 541 | 553 | 4.2e-06 | 26.7 | 0.0038 | 7.1 | 7.1 |
| pfu_aug1.0_4619.1_44987.t1 | 3 | 1 | zf-C2H2_jaz | 543 | 563 | 1.4e-11 | 44.1 | 4.3e-08 | 8.0e-05 | 22.6 |
| pfu_aug1.0_4619.1_44987.t1 | 3 | 1 | zf-met | 543 | 562 | 5.4e-11 | 42.3 | 1.0e-06 | 0.0019 | 18.3 |
| pfu_aug1.0_4619.1_44987.t1 | 3 | 1 | zf-C2H2 | 543 | 566 | 4.3e-10 | 39.3 | 7.3e-05 | 0.14 | 12.6 |
| pfu_aug1.0_4619.1_44987.t1 | 3 | 1 | zf-C2H2_4 | 543 | 566 | 2.7e-09 | 36.7 | 7.3e-05 | 0.14 | 12.5 |
| pfu_aug1.0_4619.1_44987.t1 | 3 | 2 | zf-H2C2_2 | 559 | 583 | 4.2e-06 | 26.7 | 0.0034 | 6.3 | 7.2 |
| pfu_aug1.0_4619.1_44987.t1 | 3 | 2 | zf-C2H2_jaz | 573 | 593 | 1.4e-11 | 44.1 | 7.7e-06 | 0.014 | 15.5 |
| pfu_aug1.0_4619.1_44987.t1 | 3 | 2 | zf-met | 573 | 593 | 5.4e-11 | 42.3 | 4.4e-07 | 0.00081 | 19.5 |
| pfu_aug1.0_4619.1_44987.t1 | 3 | 2 | zf-C2H2 | 573 | 595 | 4.3e-10 | 39.3 | 8.5e-09 | 1.6e-05 | 24.9 |
| pfu_aug1.0_4619.1_44987.t1 | 3 | 2 | zf-C2H2_4 | 573 | 595 | 2.7e-09 | 36.7 | 4.9e-08 | 9.0e-05 | 22.5 |
| pfu_aug1.0_4619.1_44987.t1 | 3 | 3 | zf-H2C2_2 | 588 | 612 | 4.2e-06 | 26.7 | 1.6e-06 | 0.003 | 17.7 |
| pfu_aug1.0_4619.1_44987.t1 | 3 | 3 | zf-C2H2_jaz | 601 | 620 | 1.4e-11 | 44.1 | 0.00013 | 0.25 | 11.5 |
| pfu_aug1.0_4619.1_44987.t1 | 3 | 3 | zf-met | 601 | 620 | 5.4e-11 | 42.3 | 0.00053 | 0.98 | 9.7 |
| pfu_aug1.0_4619.1_44987.t1 | 3 | 3 | zf-C2H2 | 601 | 620 | 4.3e-10 | 39.3 | 0.00012 | 0.23 | 11.8 |
| pfu_aug1.0_4619.1_44987.t1 | 3 | 3 | zf-C2H2_4 | 601 | 623 | 2.7e-09 | 36.7 | 0.0011 | 2.0 | 8.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4619.1_44987.t1 | gi|326667380|ref|XP_001919267.3| | 2.0e-16 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 9 |
| egg-4cell | 2 |
| 8-16cell | 2 |
| egg-Dshape | 1 |
| >Adult tissues | |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4619.1_44987.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4619.1_44987.t1 atgaattgctaccagaagttttacactaatcagattcattctagctcgttactatgtcaacttgctaccatgtggaaaag tcaagttctatgtgacgctattatcaaatctgggacaatcagcattaaggctcaccgagtggtgttagtggcagcatgtc ctatgttacagtccatggaaaatgcctctataggatctcacttggaggtcagactcgcctctgatataaaggaagaatcc atcaatacattcctccaatatttgtacgaaggttttatgttactgacagaggaaaattgtaaagacgtggagaaaatagg tcgtctcctacaagttgacagtgttatcaaatgctgtggagattttttcaaatgtttaagtacaaggactggatcggtgg acctaagtgaagagtatcgctactctaatttccgagatgttgaattccgccatgtacgttcttctgacatgcaaaagaca cttaaagacagacctctaaaaagaggtttagatacaaatagaccaattagtccccttcataaacgccaaagatttcattc cagtattacagatgacgctgcaagtatgtcacagagctatgactcccctagtccctgggatagagtaccacacccaggca cacctataaggcatggtccgtcctctcagggtggggtcattgacatggtgggagatagcttagagcttctacagactgac ccacctggcactgtcaatcttactgagggcaggagtaataataaaagtgtgtctatagcagtatctagtcaactcaactc tgaatcagatatacaaatagtaaatgtagagaacagaagacaagaggatacaataagtggctcacatagtcagaataggg gcacttctaaccaacgtcttatgtcggacaaacctgttcctgtcagtatacattcgcctcagagacaaatagatcttgat tcttctgtaagaagacagcaagcatccccgttacaccctcatcatccatctatgtcagttcctacacagtcaccacaggc agcagaatcttcatttacttcgtccaggcagtttgacacgagcccacagtccagtcatatgatatcttcccatccacgcc ctgggttaatgtcaaagccttttgccatggggagtgcaccccagtcctccagctcagacactgtactaggtgtcagggga cctgaatctcagaattctgagtctgcttctgtagatacagggcaaaacgcaagatcagcttctacccaggatgaaaataa aacagtgaaaactgatgaaagtataacagactttggaattgttaagattgagtcggatgactctaatactgggggactag acatgtacgtagatactcgggaagatggaatggtcaaacttacgcgtaactctgacaatgatatggaagactctacggct ggggaccaaagtctagactggtccagagacagagtggaaggagggccagaaatggaccctaattcttcatggttcacagg acaacaagggcatggggttctgccctctcacattggcaagacgctgaacaaaccaattggtgtagcagtgtgggaaggtt tgcctctcctttctggacaacccctatacacttgtgatctttgtcagaaaggctttaactctcgtcaaggctttgataat cataaaaagatggtccatggctccaaagaagaatgttttacttgtactgtttgtcagaaaatgttccccaccaaaagcac tttgtccactcacatgagggtgcattcaaccgccagaccatttgtatgtaatgtgtgtcagagagcttacaaacataaga aggatttgaagcttcaccttgaatgtcattgtcgtcaagacattcaaattgataaatga |
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Protein
| Protein ID | pfu_aug1.0_4619.1_44987.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4619.1_44987.t1 MNCYQKFYTNQIHSSSLLCQLATMWKSQVLCDAIIKSGTISIKAHRVVLVAACPMLQSMENASIGSHLEVRLASDIKEES INTFLQYLYEGFMLLTEENCKDVEKIGRLLQVDSVIKCCGDFFKCLSTRTGSVDLSEEYRYSNFRDVEFRHVRSSDMQKT LKDRPLKRGLDTNRPISPLHKRQRFHSSITDDAASMSQSYDSPSPWDRVPHPGTPIRHGPSSQGGVIDMVGDSLELLQTD PPGTVNLTEGRSNNKSVSIAVSSQLNSESDIQIVNVENRRQEDTISGSHSQNRGTSNQRLMSDKPVPVSIHSPQRQIDLD SSVRRQQASPLHPHHPSMSVPTQSPQAAESSFTSSRQFDTSPQSSHMISSHPRPGLMSKPFAMGSAPQSSSSDTVLGVRG PESQNSESASVDTGQNARSASTQDENKTVKTDESITDFGIVKIESDDSNTGGLDMYVDTREDGMVKLTRNSDNDMEDSTA GDQSLDWSRDRVEGGPEMDPNSSWFTGQQGHGVLPSHIGKTLNKPIGVAVWEGLPLLSGQPLYTCDLCQKGFNSRQGFDN HKKMVHGSKEECFTCTVCQKMFPTKSTLSTHMRVHSTARPFVCNVCQRAYKHKKDLKLHLECHCRQDIQIDK |
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