Gene
Gene Model ID | pfu_aug1.0_462.1_15070 |
---|---|
Locus | scaffold462.1 : 1 ... 5605 : + |
To GenomeBrowser | scaffold462.1:1..5605 |
Genes list of scaffold | scaffold462.1 |
Synonym | pfu_aug2.0_28.1_26691 |
Manual annotation
Study field | structural proteins |
---|---|
Gene name | twitchin |
Description | Twitchin partial sequence. BLASTP hit to AB062881 (Mytius galloprovincialis). |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_462.1_15070.t1 | 1 | 1 | I-set | 37 | 124 | 2.3e-20 | 72.2 | 1.2e-23 | 3.6e-20 | 71.6 |
pfu_aug1.0_462.1_15070.t1 | 1 | 1 | Ig_2 | 46 | 123 | 6.6e-12 | 45.3 | 2.2e-15 | 6.6e-12 | 45.3 |
pfu_aug1.0_462.1_15070.t1 | 1 | 1 | Ig_3 | 49 | 111 | 1.9e-06 | 28.2 | 6.3e-10 | 1.9e-06 | 28.2 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_462.1_15070.t1 | gi|11138044|dbj|BAB17763.1| | twitchin [Mytilus galloprovincialis] | 4.00001e-40 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
adductorMuscle | 2 |
Transcript
Transcript ID | pfu_aug1.0_462.1_15070.t1 |
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Definition | - |
>pfu_aug1.0_462.1_15070.t1 catctccaatacctaaagtatcagccagcagagagcctacacctctcagaaggtccagacagccatcattagagccagta cctgagccacctaaggaagagagaccagactttaactttggtctgcgtcctcgtctaattcaggccggcacagacttcaa actcctgtgtattgttcaatcaacacccactcctaaggtcacctggacaaaggacggcaaggacctttccaggaatgatc attacatgctgtcatactcctctggtgtgtgtaccatggaggtacagaacgcacgtgtagaggatactggacggtacaca tgtagtgccatcaacgatctaggagaggaagaaacacacactaatgttgttgttgaagatcgcgtgcatacaggattgga caagaagcttagcctaggtacggtgccacgtttaacccggcatacatcattagaaccatcttacaacagacgagcgagtc acgcagattactcatcatcgtataaagattcctcatactcaacgtcctcacgatacggaaaatctggacgttatatcgat aactatagttatgatgattcatacacgagtcgcagctctcgtaggcaaagtaagtcatcgtacgatacctaccgtagctc ttctaaatatagtgactctactaaatcttacaaggatagtgtaagggatctgatttattga |
Protein
Protein ID | pfu_aug1.0_462.1_15070.t1 |
---|---|
Definition | - |
>pfu_aug1.0_462.1_15070.t1 SPIPKVSASREPTPLRRSRQPSLEPVPEPPKEERPDFNFGLRPRLIQAGTDFKLLCIVQSTPTPKVTWTKDGKDLSRNDH YMLSYSSGVCTMEVQNARVEDTGRYTCSAINDLGEEETHTNVVVEDRVHTGLDKKLSLGTVPRLTRHTSLEPSYNRRASH ADYSSSYKDSSYSTSSRYGKSGRYIDNYSYDDSYTSRSSRRQSKSSYDTYRSSSKYSDSTKSYKDSVRDLIY |