Gene
| Gene Model ID | pfu_aug1.0_462.1_15070 |
|---|---|
| Locus | scaffold462.1 : 1 ... 5605 : + |
| To GenomeBrowser | scaffold462.1:1..5605 |
| Genes list of scaffold | scaffold462.1 |
| Synonym | pfu_aug2.0_28.1_26691 |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | twitchin |
| Description | Twitchin partial sequence. BLASTP hit to AB062881 (Mytius galloprovincialis). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_462.1_15070.t1 | 1 | 1 | I-set | 37 | 124 | 2.3e-20 | 72.2 | 1.2e-23 | 3.6e-20 | 71.6 |
| pfu_aug1.0_462.1_15070.t1 | 1 | 1 | Ig_2 | 46 | 123 | 6.6e-12 | 45.3 | 2.2e-15 | 6.6e-12 | 45.3 |
| pfu_aug1.0_462.1_15070.t1 | 1 | 1 | Ig_3 | 49 | 111 | 1.9e-06 | 28.2 | 6.3e-10 | 1.9e-06 | 28.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_462.1_15070.t1 | gi|11138044|dbj|BAB17763.1| | twitchin [Mytilus galloprovincialis] | 4.00001e-40 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_462.1_15070.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_462.1_15070.t1 catctccaatacctaaagtatcagccagcagagagcctacacctctcagaaggtccagacagccatcattagagccagta cctgagccacctaaggaagagagaccagactttaactttggtctgcgtcctcgtctaattcaggccggcacagacttcaa actcctgtgtattgttcaatcaacacccactcctaaggtcacctggacaaaggacggcaaggacctttccaggaatgatc attacatgctgtcatactcctctggtgtgtgtaccatggaggtacagaacgcacgtgtagaggatactggacggtacaca tgtagtgccatcaacgatctaggagaggaagaaacacacactaatgttgttgttgaagatcgcgtgcatacaggattgga caagaagcttagcctaggtacggtgccacgtttaacccggcatacatcattagaaccatcttacaacagacgagcgagtc acgcagattactcatcatcgtataaagattcctcatactcaacgtcctcacgatacggaaaatctggacgttatatcgat aactatagttatgatgattcatacacgagtcgcagctctcgtaggcaaagtaagtcatcgtacgatacctaccgtagctc ttctaaatatagtgactctactaaatcttacaaggatagtgtaagggatctgatttattga |
|
Protein
| Protein ID | pfu_aug1.0_462.1_15070.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_462.1_15070.t1 SPIPKVSASREPTPLRRSRQPSLEPVPEPPKEERPDFNFGLRPRLIQAGTDFKLLCIVQSTPTPKVTWTKDGKDLSRNDH YMLSYSSGVCTMEVQNARVEDTGRYTCSAINDLGEEETHTNVVVEDRVHTGLDKKLSLGTVPRLTRHTSLEPSYNRRASH ADYSSSYKDSSYSTSSRYGKSGRYIDNYSYDDSYTSRSSRRQSKSSYDTYRSSSKYSDSTKSYKDSVRDLIY |
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