Gene
| Gene Model ID | pfu_aug1.0_462.1_15071 |
|---|---|
| Locus | scaffold462.1 : 6186 ... 12364 : + |
| To GenomeBrowser | scaffold462.1:6186..12364 |
| Genes list of scaffold | scaffold462.1 |
| Synonym | pfu_aug2.0_28.1_26690 |
Manual annotation
| Study field | structural proteins |
|---|---|
| Gene name | twitchin |
| Description | Twitchin partial sequence. BLASTP hit to AB062881 (Mytius galloprovincialis). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_462.1_15071.t1 | 2 | 1 | Ig_3 | 16 | 93 | 9.5e-14 | 51.6 | 1.1e-11 | 2.0e-08 | 34.5 |
| pfu_aug1.0_462.1_15071.t1 | 2 | 1 | I-set | 17 | 106 | 2.90069e-42 | 142.4 | 1.1e-27 | 2.1e-24 | 85.2 |
| pfu_aug1.0_462.1_15071.t1 | 2 | 1 | Ig_2 | 22 | 102 | 1.2e-24 | 86.2 | 2.0e-15 | 3.6e-12 | 46.2 |
| pfu_aug1.0_462.1_15071.t1 | 2 | 1 | V-set | 23 | 101 | 1.9e-13 | 50.3 | 3.9e-08 | 7.2e-05 | 22.6 |
| pfu_aug1.0_462.1_15071.t1 | 2 | 1 | ig | 31 | 91 | 3.6e-13 | 49.4 | 5.7e-11 | 1.1e-07 | 31.9 |
| pfu_aug1.0_462.1_15071.t1 | 2 | 2 | I-set | 124 | 205 | 2.90069e-42 | 142.4 | 2.0e-18 | 3.6e-15 | 55.5 |
| pfu_aug1.0_462.1_15071.t1 | 2 | 2 | Ig_3 | 126 | 198 | 9.5e-14 | 51.6 | 1.5e-05 | 0.029 | 14.8 |
| pfu_aug1.0_462.1_15071.t1 | 2 | 2 | Ig_2 | 130 | 210 | 1.2e-24 | 86.2 | 6.1e-13 | 1.1e-09 | 38.2 |
| pfu_aug1.0_462.1_15071.t1 | 2 | 2 | V-set | 130 | 202 | 1.9e-13 | 50.3 | 4.6e-08 | 8.5e-05 | 22.4 |
| pfu_aug1.0_462.1_15071.t1 | 2 | 2 | ig | 138 | 196 | 3.6e-13 | 49.4 | 8.5e-06 | 0.016 | 15.3 |
Transcript
| Transcript ID | pfu_aug1.0_462.1_15071.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_462.1_15071.t1 atgtttcagcaacctgcaattgaaaagacagagaacaatgacgatcccccggtgttttccactgagttgaaaccccagag gctaacagaaggcgacaggttaaagctgacctgcacagttaaaggtagaccggaccctgacgtggaatggttctgtaatg gacagttgttgaagaatgacgaggtgacacacataaagaaccgagctgggaggtgttctctggagatagatgaggttcta tccgatgatgatggtacatatgtctgtaaagccatcaactctgccgggtcgtcatcgtcaaaaacaagtgtacaaattag gcgtaaaacgcccgtaaaggagaagataatggcgaaacaacctgatggaccccggtttatagctcaccctgctggtgtta tactaaaggatggagactctactgttatagaatgccgtatatcaggcgatccaggtgtacaatggtataaaggtaccact ctactgacggacagtgaagattttcgacatgagagaagtggcgacacctataaattagtcatagctgaagtcttcccaga agatggtgccatttataagtgtgtggcgacaaattcttcaggatcaatttcaagcntgttttacaatctttgtggatggt ag |
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Protein
| Protein ID | pfu_aug1.0_462.1_15071.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_462.1_15071.t1 MFQQPAIEKTENNDDPPVFSTELKPQRLTEGDRLKLTCTVKGRPDPDVEWFCNGQLLKNDEVTHIKNRAGRCSLEIDEVL SDDDGTYVCKAINSAGSSSSKTSVQIRRKTPVKEKIMAKQPDGPRFIAHPAGVILKDGDSTVIECRISGDPGVQWYKGTT LLTDSEDFRHERSGDTYKLVIAEVFPEDGAIYKCVATNSSGSISSXFYNLCGW |
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