Gene
| Gene Model ID | pfu_aug1.0_4628.1_01780 |
|---|---|
| Locus | scaffold4628.1 : 7 ... 32213 : + |
| To GenomeBrowser | scaffold4628.1:7..32213 |
| Genes list of scaffold | scaffold4628.1 |
| Synonym | pfu_aug2.0_210.1_00430 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4628.1_01780.t1 | 1 | 1 | MCM2_N | 76 | 176 | 1.8e-17 | 63.7 | 7.4e-21 | 1.8e-17 | 63.7 |
| pfu_aug1.0_4628.1_01780.t1 | 2 | 1 | MCM_N | 191 | 306 | 1.8e-19 | 70.4 | 7.3e-23 | 1.8e-19 | 70.4 |
| pfu_aug1.0_4628.1_01780.t1 | 1 | 1 | MCM | 457 | 794 | 0.0 | 470.4 | 0.0 | 0.0 | 470.0 |
| pfu_aug1.0_4628.1_01780.t1 | 2 | 1 | Mg_chelatase | 511 | 538 | 1.2e-06 | 27.8 | 0.11 | 260.0 | 0.5 |
| pfu_aug1.0_4628.1_01780.t1 | 2 | 2 | Mg_chelatase | 567 | 629 | 1.2e-06 | 27.8 | 6.4e-09 | 1.6e-05 | 24.1 |
| pfu_aug1.0_4628.1_01780.t1 | 2 | 2 | MCM_N | 822 | 862 | 1.8e-19 | 70.4 | 0.69 | 1700.0 | -0.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4628.1_01780.t1 | gi|115971410|ref|XP_001177558.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 2 |
Transcript
| Transcript ID | pfu_aug1.0_4628.1_01780.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4628.1_01780.t1 atgaataaaatcatggagatcttgtttgtatgctacaacaatacctccagaactcctcttcccatatttaacatgatttt tcattttgaaaataaaaccctcatggctcaatacatctacatcatcagttttggtttcttgaaagcacaaaatatcatga ttattaaagagttctttgaactctggataattaagccttctcttaaggccacaacaattaagagaaaagattaccgcgct attccagcattagacagatttgatcaggaggggctagatgacgatgatgattactcagaaatgtcagaatcgcaacgtca agctgctgagagagaaatcagacggagagagagggcagagggtatcacagctggacggatgcggacaggacttatgtatg aggaatctgatgaggaagatgacgcagcgcccagaaaacgtcgacgtgcggagagagcagcggaaggtgacattgaagat gaagagatggttgaaagtattgaaaacttggaagacatgaaggggcatcccatcagagaatgggtaacaatgctgggacc gaaaactgagatcaaaaacaggttcaagaacttcttaaggacatttgttgactccaagggacacaatgtatacagagaaa agataagacagatggttgaagcaaacagagagagtttggtgatagattatggtatgttagcatcagtggaacaagttctt gcttacttcctcccagaagctcctgcagaaatgttggctaactttgatgaggcttgcaaggaagtggtatttagcatgta ccctaagtatgagaatatagccaaggaaattcatgtccgtgtagcggaactccctcttatagaagagttaagatcacttc gacagcttcatttgaatcaattgatacgtactagtggagtgatcacaagctgtactggagttctaccacagctcagtgtc atcaagtacgattgtaacaagtgtaactttatactgggaccattctatcagacccaaaaccaggaagtcaaaccaggatc atgcccagagtgtcagtccacagggccatttgagattaatatggagcagacactgtataaaaattaccaacgggttacga tacaagaaagtcccggcaaagtgccagcaggaaggttgcctaggtcaaaagatgccattttgttagatgatttggtggat tcgtgtaagccaggagatgagttggaattaacaggtatttatcacaataactatgacgggtcactgaatacaaataacgg attcccagtgtttgctacggtgatacatgctaactacattaccaagaaggatgataaactcgccctcagtgctctgacag atgaagatatcaaggctgtagtacagttatctaaggacgagaggattggagagaggatctttgccagtatggcaccatca atctatggacacgaagacatcaagaaggctgtggcattatcaatatttggtggagagcctaaaaatcccggaggtaaaca taaagtcagaggagacatcaatgcacttatctgtggggaccctggtactgccaaatctcagttcctcaagtatgtggaaa agactgctccacgtgtggtgttcacgactggtcaaggagcatcagctgttggcttaaccgcttatgtccagaggaatcca gtttccaaggagtggacgttagaggcaggtgccttggtgcttgcagacaaaggaatgtgtctgatagatgagtttgataa gatgaatgatgcagacaggaccagtatacacgaggctatggaacagcagagtatatctgtatccaaggctggtatcgtta cctccctacaagcacgatgtgccgtactggcagctgctaaccctataggaggaagatacgatccctcacttaccttctct gaaaatgttgatctgacggagcctatattgtccagatttgatattctatgtgtggttagagatacagtggatcctgtaca ggacgagaggttggctaagtttgtaacaggaagtcatatgaagcatcatcctaacgcttcagaatctcaggctgatgaag atcttaatgaactgaacacaagttctactgtggagcccattcctcaggatttattaaagaagtacattatttactgcaaa gataaagtacatcccaagttacaccagatggaccaagataaagtagccaagatgtatgcagaactcaggcgggaatctat ggcgacaggtagcattcctataacagtacgtcacattgagtcaatgatccgtatggcggagtcgcatgccaagatgcacc ttcgagattatgtaaatgaggaagatgtgaacatggccatacgtataatgttggagagcttcatcagtacacagaaattc tctgtcacaagaagcatgagaaagacatttggtcgatatttggctttcaagaaagacaacaatgaacttctcctgttcat actgaaacagttagctatggatcaaatgaccttccagagaaacagatttggactggatcaagatacgatagagatctcag aaaaagatctagctgacaaggcacgacagatcaacatcagcaacctgtcttcattttacgatagtgatatttttagagcc aacagatttacccacgactccaagaggaaagttattttgcagagtgtttga |
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Protein
| Protein ID | pfu_aug1.0_4628.1_01780.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4628.1_01780.t1 MNKIMEILFVCYNNTSRTPLPIFNMIFHFENKTLMAQYIYIISFGFLKAQNIMIIKEFFELWIIKPSLKATTIKRKDYRA IPALDRFDQEGLDDDDDYSEMSESQRQAAEREIRRRERAEGITAGRMRTGLMYEESDEEDDAAPRKRRRAERAAEGDIED EEMVESIENLEDMKGHPIREWVTMLGPKTEIKNRFKNFLRTFVDSKGHNVYREKIRQMVEANRESLVIDYGMLASVEQVL AYFLPEAPAEMLANFDEACKEVVFSMYPKYENIAKEIHVRVAELPLIEELRSLRQLHLNQLIRTSGVITSCTGVLPQLSV IKYDCNKCNFILGPFYQTQNQEVKPGSCPECQSTGPFEINMEQTLYKNYQRVTIQESPGKVPAGRLPRSKDAILLDDLVD SCKPGDELELTGIYHNNYDGSLNTNNGFPVFATVIHANYITKKDDKLALSALTDEDIKAVVQLSKDERIGERIFASMAPS IYGHEDIKKAVALSIFGGEPKNPGGKHKVRGDINALICGDPGTAKSQFLKYVEKTAPRVVFTTGQGASAVGLTAYVQRNP VSKEWTLEAGALVLADKGMCLIDEFDKMNDADRTSIHEAMEQQSISVSKAGIVTSLQARCAVLAAANPIGGRYDPSLTFS ENVDLTEPILSRFDILCVVRDTVDPVQDERLAKFVTGSHMKHHPNASESQADEDLNELNTSSTVEPIPQDLLKKYIIYCK DKVHPKLHQMDQDKVAKMYAELRRESMATGSIPITVRHIESMIRMAESHAKMHLRDYVNEEDVNMAIRIMLESFISTQKF SVTRSMRKTFGRYLAFKKDNNELLLFILKQLAMDQMTFQRNRFGLDQDTIEISEKDLADKARQINISNLSSFYDSDIFRA NRFTHDSKRKVILQSV |
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