Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_464.1_00310
Locus scaffold464.1 : 6009 ... 14555 : -
To GenomeBrowser scaffold464.1:6009..14555
Genes list of scaffold scaffold464.1
Synonym pfu_aug2.0_1012.1_08090

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_464.1_00310.t1 1 1 NACHT 103 271 1.2e-09 38.0 4.0e-13 3.0e-09 36.7

Transcript
Transcript IDpfu_aug1.0_464.1_00310.t1
Definition-
>pfu_aug1.0_464.1_00310.t1
atgacatatgatcatagtgacgttaaagctgaagaacaaaacgtcaatttactgaaaaagaagctatatgaaatcaatgg
acgagagaccttagtgataccagtagccccattacaagagtcggataagatacctattgagcttttatttgcctcggtta
ttatatcagaggatccaaggtatagcaacaggaaaataaagccgtcccgaagagaaatgaaaggaacgaaaccacatgga
ccgaatacgaaagttgtcaaatccccgaaagatatgtttaccatagacggttctcctgttgagcatatttacatgcttgg
ggatgctgcacacggcaaaacaacttactgtatgtggcttctcaagcagtggtgtaatgcacaaaaacattgtacaaagg
acagcaaacagaacgaatgggaaaaagctttatttgaatttgacttcgttttccatctacctctacgaaatgttgaccag
tcccatgtgtctttctcagaaatgatttgcaaggatatcatgtacttcataccaaatcttcacaaaacagtagaacatgt
tctgttgagtgacagttatcgctgtttcataatcattgatgggttagacgaatggaacccaaatgagcatgctttaggaa
aacttagatgtaaagccttgccaaacttcgacaacatgtcaaattgtgtgtatttcataacaatgcggccatggaggttt
gatctcgtttcaagagtagtgcgtaataatgatgcagtattagaaatacaaggattagacgaaatgggaatcaggcatgt
aacaagaaatgtactcgtcaactattataaaatgaatccttggacagatgaatacgaaagaaagtttttggagataatgc
gcaaattagaagatgagacacttcgatcattctttcaaattcctctcttagccgtagtctgtattcagatttggtatgat
ggacaacaaataggtgagagcatgacgagtttttacacggcaatggtgaacatgatgatagagagggcaaatcttaagca
tgatgcccaacgacttgtctgccaatcaattgatttatgtgtgcctagtagtttgtctgcttatggaaacattgagaaat
atattcatgttatttcaaaattgggagaggtagcatatgatggtcttcaaacagaccaagagaaattggaatttcagaaa
gctaaactggaaaaagaagttggcgagcaggaattgaagttttcgctaaatgtaggcttcataagtcagaatgaagcccc
aagtgtgttcacaagaaatgtcttccttcatttttttcataagtctattcaggaatatctggctgctaccaatattgtga
caaagaaaactgggagcgattccttcttgaaacttttgactagtgtaagcgctattatgaaactatcgaatgtgatcaaa
tttgtatttggtttgaatccatcgttagtgagtgatatatcatggcacattttggaggctacagagagctatgtatcgtc
ctatagaaaatcatctgattttgatcaaggaactgaagagttatttaaactacataaagaagagacaaagaagccataca
gctatgtacggaacttctgtcagaaaatcgtgtcgtcagatctttgtttctacgatgggtaccttctactggcaacgttt
gtgtcgacaatgcggtactga

Protein
Protein IDpfu_aug1.0_464.1_00310.t1
Definition-
>pfu_aug1.0_464.1_00310.t1
MTYDHSDVKAEEQNVNLLKKKLYEINGRETLVIPVAPLQESDKIPIELLFASVIISEDPRYSNRKIKPSRREMKGTKPHG
PNTKVVKSPKDMFTIDGSPVEHIYMLGDAAHGKTTYCMWLLKQWCNAQKHCTKDSKQNEWEKALFEFDFVFHLPLRNVDQ
SHVSFSEMICKDIMYFIPNLHKTVEHVLLSDSYRCFIIIDGLDEWNPNEHALGKLRCKALPNFDNMSNCVYFITMRPWRF
DLVSRVVRNNDAVLEIQGLDEMGIRHVTRNVLVNYYKMNPWTDEYERKFLEIMRKLEDETLRSFFQIPLLAVVCIQIWYD
GQQIGESMTSFYTAMVNMMIERANLKHDAQRLVCQSIDLCVPSSLSAYGNIEKYIHVISKLGEVAYDGLQTDQEKLEFQK
AKLEKEVGEQELKFSLNVGFISQNEAPSVFTRNVFLHFFHKSIQEYLAATNIVTKKTGSDSFLKLLTSVSAIMKLSNVIK
FVFGLNPSLVSDISWHILEATESYVSSYRKSSDFDQGTEELFKLHKEETKKPYSYVRNFCQKIVSSDLCFYDGYLLLATF
VSTMRY

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495