Gene
| Gene Model ID | pfu_aug1.0_4665.1_30760 |
|---|---|
| Locus | scaffold4665.1 : 55076 ... 59615 : + |
| To GenomeBrowser | scaffold4665.1:55076..59615 |
| Genes list of scaffold | scaffold4665.1 |
| Synonym | pfu_aug2.0_1311.1_04956 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4665.1_30760.t1 | 1 | 1 | SK_channel | 52 | 168 | 8.9e-33 | 112.6 | 3.6e-36 | 8.9e-33 | 112.6 |
| pfu_aug1.0_4665.1_30760.t1 | 1 | 1 | Ion_trans_2 | 247 | 327 | 1.7e-15 | 56.4 | 7.0e-19 | 1.7e-15 | 56.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4665.1_30760.t1 | gi|260802120|ref|XP_002595941.1| | hypothetical protein BRAFLDRAFT_235511 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_4665.1_30760.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4665.1_30760.t1 atgagtgggaacaccatagttgaggacccgggaattccactggtggaccgaaggaacggcaagtattcaaaatacgtgga ggaggacgccaacagccaggggacagactacggcagcctggtcatgtcatcaaaatttgataatatcagttatcgactta gtcacagaaaagttctcctaaagaggcgagtggtcatcgtgaacttagagttcgtcttcgctttcttaggcattgtcatc atgttggtcgaaacggaactttactttgcaaagataatcaccaaatcttccattgtgtccattattctcaagtcatgcat atcatttacaaccttgtttttgatcatgttcatcttggcataccacgtggttggaattcaactgcatatgacggacaaca gcttagaggactggcgattggccgtgacctttccttggacatatctaaaaatagcggtagagattttggtctgtattgtt caccccattccaggaaatattgaaatttacgccaacgatccgaaaggaaagtctcagattgtttctatagatgcaattct atcgatacttatgcttctccgcatatacttactagccaaattcatggtcatccatagcaagctattgacaagtacagcaa ctcaaagtctaggtgccctcaacaaggtcaagatcaacgcagccttcgttttcaaagctttaatgtcctcaaatccggga actttactcatagttataatgctagccattctactgattgacacgtgggcaatgcgcacgtgcgagacttattatcaccc ggacgaagaacactcggactttttcaatgcaatgtggctggtggccattacttttctaactgtgggatatggagatattt atccgaacagctattgcggccggtttgtttccgtggcaacaggccttatgggggttggtacaacggctcttcttgttgct gttttggcctctaaacttgaacagtcacgagccgaaaaatatgtgcataattttgttgcgcgcgctcagcttgataaaga gaggaagaacgccgcagctgacgtcatcaagtacgtattacaattatggcgtctgaagaaaaataatattgataatactg gaaaaagaatacgactgcatggaaaactactccaagcaatttctacaatgaaagaggccaaaaatgaaaaatcttccatt ggggagacagccattggttttattgaggtttccaaggcgattacggatgtatatgatgtcgtagaaggtttgcaagaaga acagaacgaaatgaaaacgaaagtagaagaaattgaaaagactttaatgactctggattctaaattagactctattgttt ctgcagttgtcaaacgctga |
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Protein
| Protein ID | pfu_aug1.0_4665.1_30760.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4665.1_30760.t1 MSGNTIVEDPGIPLVDRRNGKYSKYVEEDANSQGTDYGSLVMSSKFDNISYRLSHRKVLLKRRVVIVNLEFVFAFLGIVI MLVETELYFAKIITKSSIVSIILKSCISFTTLFLIMFILAYHVVGIQLHMTDNSLEDWRLAVTFPWTYLKIAVEILVCIV HPIPGNIEIYANDPKGKSQIVSIDAILSILMLLRIYLLAKFMVIHSKLLTSTATQSLGALNKVKINAAFVFKALMSSNPG TLLIVIMLAILLIDTWAMRTCETYYHPDEEHSDFFNAMWLVAITFLTVGYGDIYPNSYCGRFVSVATGLMGVGTTALLVA VLASKLEQSRAEKYVHNFVARAQLDKERKNAAADVIKYVLQLWRLKKNNIDNTGKRIRLHGKLLQAISTMKEAKNEKSSI GETAIGFIEVSKAITDVYDVVEGLQEEQNEMKTKVEEIEKTLMTLDSKLDSIVSAVVKR |
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