Gene
| Gene Model ID | pfu_aug1.0_4669.1_59574 |
|---|---|
| Locus | scaffold4669.1 : 21976 ... 34969 : + |
| To GenomeBrowser | scaffold4669.1:21976..34969 |
| Genes list of scaffold | scaffold4669.1 |
| Synonym | pfu_aug2.0_860.1_01199 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4669.1_59574.t1 | 6 | 1 | zf-C2H2 | 153 | 169 | 3.6e-21 | 74.1 | 0.72 | 2100.0 | -0.7 |
| pfu_aug1.0_4669.1_59574.t1 | 6 | 1 | zf-H2C2_2 | 191 | 207 | 1.6e-23 | 81.7 | 0.1 | 310.0 | 1.9 |
| pfu_aug1.0_4669.1_59574.t1 | 6 | 2 | zf-C2H2 | 195 | 218 | 3.6e-21 | 74.1 | 1.0e-05 | 0.03 | 14.6 |
| pfu_aug1.0_4669.1_59574.t1 | 5 | 1 | zf-C2H2_4 | 195 | 218 | 7.1e-13 | 47.9 | 0.00017 | 0.5 | 10.8 |
| pfu_aug1.0_4669.1_59574.t1 | 4 | 1 | zf-met | 201 | 214 | 3.6e-06 | 26.9 | 0.15 | 450.0 | 1.2 |
| pfu_aug1.0_4669.1_59574.t1 | 6 | 2 | zf-H2C2_2 | 210 | 237 | 1.6e-23 | 81.7 | 1.4e-05 | 0.04 | 14.2 |
| pfu_aug1.0_4669.1_59574.t1 | 6 | 3 | zf-C2H2 | 224 | 248 | 3.6e-21 | 74.1 | 3.3e-05 | 0.098 | 13.0 |
| pfu_aug1.0_4669.1_59574.t1 | 5 | 2 | zf-C2H2_4 | 224 | 248 | 7.1e-13 | 47.9 | 0.0039 | 12.0 | 6.5 |
| pfu_aug1.0_4669.1_59574.t1 | 6 | 3 | zf-H2C2_2 | 241 | 265 | 1.6e-23 | 81.7 | 1.2e-08 | 3.6e-05 | 23.8 |
| pfu_aug1.0_4669.1_59574.t1 | 6 | 4 | zf-C2H2 | 254 | 276 | 3.6e-21 | 74.1 | 1.3e-08 | 3.8e-05 | 23.7 |
| pfu_aug1.0_4669.1_59574.t1 | 5 | 3 | zf-C2H2_4 | 254 | 276 | 7.1e-13 | 47.9 | 1.1e-06 | 0.0032 | 17.6 |
| pfu_aug1.0_4669.1_59574.t1 | 3 | 1 | zf-C2H2_jaz | 254 | 276 | 1.4e-08 | 34.6 | 1.3e-08 | 4.0e-05 | 23.6 |
| pfu_aug1.0_4669.1_59574.t1 | 4 | 2 | zf-met | 254 | 274 | 3.6e-06 | 26.9 | 9.6e-06 | 0.028 | 14.6 |
| pfu_aug1.0_4669.1_59574.t1 | 6 | 4 | zf-H2C2_2 | 268 | 294 | 1.6e-23 | 81.7 | 2.6e-09 | 7.7e-06 | 25.9 |
| pfu_aug1.0_4669.1_59574.t1 | 6 | 5 | zf-C2H2 | 282 | 306 | 3.6e-21 | 74.1 | 2.5e-08 | 7.4e-05 | 22.8 |
| pfu_aug1.0_4669.1_59574.t1 | 5 | 4 | zf-C2H2_4 | 282 | 306 | 7.1e-13 | 47.9 | 3.2e-06 | 0.0096 | 16.1 |
| pfu_aug1.0_4669.1_59574.t1 | 3 | 2 | zf-C2H2_jaz | 289 | 306 | 1.4e-08 | 34.6 | 0.00057 | 1.7 | 8.9 |
| pfu_aug1.0_4669.1_59574.t1 | 4 | 3 | zf-met | 289 | 305 | 3.6e-06 | 26.9 | 0.0013 | 3.9 | 7.8 |
| pfu_aug1.0_4669.1_59574.t1 | 6 | 5 | zf-H2C2_2 | 299 | 322 | 1.6e-23 | 81.7 | 2.2e-13 | 6.4e-10 | 38.8 |
| pfu_aug1.0_4669.1_59574.t1 | 6 | 6 | zf-C2H2 | 312 | 334 | 3.6e-21 | 74.1 | 1.1e-07 | 0.00033 | 20.8 |
| pfu_aug1.0_4669.1_59574.t1 | 5 | 5 | zf-C2H2_4 | 312 | 334 | 7.1e-13 | 47.9 | 3.2e-06 | 0.0095 | 16.2 |
| pfu_aug1.0_4669.1_59574.t1 | 3 | 3 | zf-C2H2_jaz | 312 | 332 | 1.4e-08 | 34.6 | 0.0001 | 0.31 | 11.2 |
| pfu_aug1.0_4669.1_59574.t1 | 4 | 4 | zf-met | 312 | 332 | 3.6e-06 | 26.9 | 0.0002 | 0.6 | 10.3 |
| pfu_aug1.0_4669.1_59574.t1 | 6 | 6 | zf-H2C2_2 | 329 | 335 | 1.6e-23 | 81.7 | 0.23 | 680.0 | 0.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4669.1_59574.t1 | gi|354486029|ref|XP_003505184.1| | PREDICTED: zinc finger protein 410 isoform X1 [Cricetulus griseus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4669.1_59574.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4669.1_59574.t1 atggaacatatacaaataagccatcgccttaacacaatatcaacagctgtcaattccacagagaatacatcttccacagt aaacgattttgtagaagatggcaaccagacaaccctgacctcagtgccagaggtcatgacctcacctgcagtcaacttta tgcttcttagagacatacttggagttgatcagggaagcacttcaatgcctgctgtaacagaagaaaaaatcatggacagt gattataatcatatatttgcggtggctcaggcaaatttggtcgctcagacccaacaagacatagccctacagttggttga acagagtcaaggtcatctaagtgagctttatgaaggatcacaagagccgaccaatcaaagctttactaagtgttcaaact ctcccttaattgctgacaatgaaaacaagctgtcaaatacagagaaaaaaatagcttgtcctatacaaatgggaggatgt acgaccaccacaaaacgcaatgaaaatgacaagaattcctcagccagtcagcaaaatgtagtgacgatttcaactaagaa gttgatgaaagttgagaagttgaaatgtggaatagagggctgtgacagatcatttgtatataaggcacatctcaaatatc acaagcttactcacagtaatgacagaagattccattgtgaggtggaggggtgtgggcagtcattctacacagcacagaga ctgaaggttcactcccgaatccataatggaacacgtccatttgtatgtgaggagtgtaacagaggttttactactgccgg aaacctgaaaaatcacaaaagaactcactctggagaacgaccatatgtgtgtacctatgaaggatgtcagaaaagctttg cagagaactctacccttcaaaaacatctcagaacacatacaggagagaaacccttcaagtgtgcggtctgtgataaagcc ttcagtcaaagtagcagtcgtgctcagcacatgaagaaacaccttatagaggagaaggacaaatggctgacggaaagtca actcagtagtgatgccagcggagtaatacaggaaccggaaggaagcagcagccaagctccgaaacagtcagaattaccgc tagatggcgttgcgttgaatgatagttcacagactccgttgtcttcttgtcaacttgactttgttcctggacatacaact ttgttgacttttgttcataaagtcgatggtctgagtgtggacaacgctgaaaaacaaataatcattatacaagaacctgg acaacatgtactgcaggtcccatctaacccatgtagtgaagggataagaagtgaaggccaagtgtatgtgatcaaggatt tgtatcaacaatag |
|
Protein
| Protein ID | pfu_aug1.0_4669.1_59574.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4669.1_59574.t1 MEHIQISHRLNTISTAVNSTENTSSTVNDFVEDGNQTTLTSVPEVMTSPAVNFMLLRDILGVDQGSTSMPAVTEEKIMDS DYNHIFAVAQANLVAQTQQDIALQLVEQSQGHLSELYEGSQEPTNQSFTKCSNSPLIADNENKLSNTEKKIACPIQMGGC TTTTKRNENDKNSSASQQNVVTISTKKLMKVEKLKCGIEGCDRSFVYKAHLKYHKLTHSNDRRFHCEVEGCGQSFYTAQR LKVHSRIHNGTRPFVCEECNRGFTTAGNLKNHKRTHSGERPYVCTYEGCQKSFAENSTLQKHLRTHTGEKPFKCAVCDKA FSQSSSRAQHMKKHLIEEKDKWLTESQLSSDASGVIQEPEGSSSQAPKQSELPLDGVALNDSSQTPLSSCQLDFVPGHTT LLTFVHKVDGLSVDNAEKQIIIIQEPGQHVLQVPSNPCSEGIRSEGQVYVIKDLYQQ |
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