Gene
| Gene Model ID | pfu_aug1.0_4689.1_45006 |
|---|---|
| Locus | scaffold4689.1 : 70529 ... 90135 : - |
| To GenomeBrowser | scaffold4689.1:70529..90135 |
| Genes list of scaffold | scaffold4689.1 |
| Synonym | pfu_aug2.0_81.1_03571 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4689.1_45006.t1 | 2 | 1 | AAA | 927 | 970 | 1.2e-08 | 35.1 | 1.4e-09 | 1.1e-05 | 25.6 |
| pfu_aug1.0_4689.1_45006.t1 | 2 | 2 | AAA | 1079 | 1141 | 1.2e-08 | 35.1 | 0.0014 | 10.0 | 6.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4689.1_45006.t1 | gi|281350573|gb|EFB26157.1| | hypothetical protein PANDA_000149, partial [Ailuropoda melanoleuca] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 2 |
| >Adult tissues | |
| maleGonad | 2 |
Transcript
| Transcript ID | pfu_aug1.0_4689.1_45006.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4689.1_45006.t1 atgaagctgaagaaacctgagaaatctcaattgggaagtggaaaaccacttaatctttcagatgtgtgtgaaaatttagc tgacgtttctatattgagtgattcaagtcaaactgagagcactgaatggaaaggtgaggaggtaaaaatcaaaccttcgg aaggaagtgctgttgtggaggtgagctttgctgaatttttagagtctgctgaagcagaggatgcgaaaactgagaacact aaagatgatgttaaagttctaggagatgaagttgatggaaaagttaggaaagctagtaaattgaagaagaaaaagtgtga tcaaacaaatacaaaaagtacagagaatgagaatattgatgctcctaccacaggaaaggatacagaggaaaatgacaatg cggatgttgaagtaaattacatggattatctcaaatcactgtcgtctgaagaagaggaggaaagtgaaattaccaaaaca gaaaaaatccaagcgaaagagaagccagcaaatattgatacttgtaaggacaaagtagaaaatcagactgaagaggagga aatcccaatgccaaaacagtatccaagtattactaacttcttcaagaaggttgataaaactcaaagtaatggcaaagcgt cctcggcaaaagtcaccgtgaaggctgacgttcacacagaacctcaagtttctcctccgactgccataataagtgacgga caaaaacgttcacctttgtcaggtagtaagctcgatcaggagatacaaatcctgggatcggaaatcgtaagtgtcgagac tccaaaaacaggactgaagaaaaggatgccaaaggagaaagatgattgtccacaatcggatacaaaggaaatgtgtttgg aatcacctagtgtcaaagaagagaagaaaacaaaaaggctcagaaaatctcttattaaagatttgaatgatactgagaat gaaggaaagaaagaaaaaccgaaaaagggttcgcagaagaaagaaagtaaagataaggaagaggagggggaagctgatga ttgtatctgtatttcagatgcagcggaaaaagacgagaaagaagataaaatgaagcaagattttttgcaaagtggagttt cagatgttgctttgggtaagaagacatcccaagctactttcagttttggcaaagctggatttcagatgaagaaagcaact ccaactgttactagagttaggaaatctgcggcaggaaaggaaggagctaatgatagttttggggagttacctgtatccga aagtactccactaaaagatggggagggtaaaaagaaacgtggaagaaaaaagaaaacggaacaaatagatgtctcagtgt gcgaacaagactcagacttagacacatcaggaatttctcgcagaagatctctacggaatcagaaagctgatactnccaac tatcagactgagaagcatgggtctcccatcagaattagactgacaagatacagtaaaagcagtaccagtcaagatgacac tttgtccccaagttcacagagaaaactggccaagaaaaaggcaaaattgaagagggcatcaactgctcagaaactgctgg agaaggcaaagagaggaaagaccttgaaacccttaatatgtgagttagggaagaaaaacaaagataaagctgaaaccgaa aaagaacaagtagcgccttcacctgttaaaactggaagacgtcgcagcgcccggctgtcggacaggcacaagtcgatgga ggaggtcctaattgtagacgatgagagcgaggatgattgttatactccgacaaagccgaaggctggtaagagaggtagac caaaagctaagaccagcagctgtactcctaaaaaagaagttaaagcccctcagaaattagcacctatattcatgaagagg ggtaaaaaagaggagccagttactcctgtcaaaaaagtattggacccagaggcagagaaaaggaggcgtgcctttctgat gagtgatgtgccagacgagcttcgtcgccaagcggcgtctgttatcatgatagcagatgctgactacccgcctattccaa aaataaatcatgtacagcagactgggattagtgatgtgctaggaggaagagacttgtggaagctaccagaggttatactg aattataggaaagacctaaatgagggaggttggaaaatgcagagtggtacatggggcgacaatttaattacaaagactga gagtactgtagattatacaaagattaagaccttcacaagtcatcccaaaatatcggaatcgagcatacatcttatcctat cggagatcggcagattgaatcctgtctacccagtcaagaaaatgtatagcattctccgagagaaaaaggaggatgattta gaggaggaagtgactgagaagaacaacaagaaagcttctaagccagacgatgaggacaccaaacctaaaactcgaccacg tagaagcttgagactgagacctgtaatagaggtgatcgatgtgataggaagtccagaaaaggtcaacgataccgaggaag ctcaggcagagaaacaggactcagtacctcctaccttggtgtttactgagagatatcagcctctgaacacatcagaggtg gtgggtaacacagcgttactgaagaagctgaaggcgtggctggtggaatggaaacatagagtggataaggaggcacgtaa agctaggatgttactgatgaaaaagtcaaaaggaaaacgtcccaaggaggaggaagactccggccctacggggataggaa aaacggcaacagtgtatgctcttgcacaggaacttggcttcaaggtatttgaggtgaatgcttcaagctgtaggaatggt aagaggattttggcacagctacaggaggctacccagtcacaccaagtgtcaaaaaactctgtgggaggttctaatactcc tgtcaaaattgataagaagaaagagcctggagtggatcagaagaaaaaactgcccactgcttttaccaacctgtttaaac aggcggaatcacagtctaaaaaggatgtacctagtaaaaaggctccaaaaaaggaggatggggattctaggaaaaagaag aggaaaagggaagaggaggaagaagagatgtcaaagagctcaaagaagaaaaagaaagatcaagaaaagtctgtgaagaa atctgccgaaacagagaaagtctcaggagaggtggattctgggaagagcctgagtctgtccagtacttcactgatactgt ttgatgaggtggacatagtatttgagcaggataaggccttctgggcggccgtacaaagtttcatgagcacgaccaaaatt ccaatcatcctgacgagtaacgactccaaactccataccaagtttgagggacggtttgaacactacgcatttaagatacc atccatggtaacaagtacaatatacctacaacttgtctgccttgtggaaaatatacgtacggacagacaggatatttata acttgatatcccttcataacggtgatataaggaaagctctgaacacgctacagctctgggcattatcagggggaggatgt acatttaatcaacttgcaattaaaaacatagagccaaagagtgaaacccaagctactgtcgttcaaaattctgtggagga aagcagtcagtcaaacattacatctgtgatagattcctacgttaagaaggatgatgacgaagatgatgattttgtgacga taaagccgattacgaagcgtcgtaagccgttgttgtttgacgaggattctaatagtttgcctcctccgttacctgatacc tgtttgtcatgtgacgtcagtcaaccagtaataaaacacaacgaganggtaacgaaaaaagaaagcaatattgtggaaga aaatgtaactccgaaagaaagtattaaaaacatgaaggaagaagtaaaatctctctcctctctatacaaattttacgata cattagcttttactgacgtaatgcgacaagtccatgaaaaatccgatctgtacggagtatcgtttgggaaagaagatttt agaggttcaattagtataggactagaggatcagcttgtgaagtatggaagccctttatcgtcacgggaactcggagccag tttgtgttctgaacttgagttgcgtagtttacttgatctccgtaaaagacaaggggaaatattgcagtcattagatgaag tagatgaggaggcgttcagtgtgccggtaaccccgtgtagcatcagtagtgtgaggaacgagtcagccagatgtgtcatc agctccaagtcagatctcaaacgggtaaatgacaacatacagagtaacgtgcccctcttactacactgtcaaccctctgt ggtagccatggattacacacccactctacgtagtatgtgtaaaaacgaacagatacgagaggcagcgaaagccaaaagaa gctgtttgcttttgagctctttttctacaccatttacattggaatcagaaacttcagttgaagcactgttcagtacagat caagtgtgcattacatgtatatcccaagagacggcaaatctgacatag |
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Protein
| Protein ID | pfu_aug1.0_4689.1_45006.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4689.1_45006.t1 MKLKKPEKSQLGSGKPLNLSDVCENLADVSILSDSSQTESTEWKGEEVKIKPSEGSAVVEVSFAEFLESAEAEDAKTENT KDDVKVLGDEVDGKVRKASKLKKKKCDQTNTKSTENENIDAPTTGKDTEENDNADVEVNYMDYLKSLSSEEEEESEITKT EKIQAKEKPANIDTCKDKVENQTEEEEIPMPKQYPSITNFFKKVDKTQSNGKASSAKVTVKADVHTEPQVSPPTAIISDG QKRSPLSGSKLDQEIQILGSEIVSVETPKTGLKKRMPKEKDDCPQSDTKEMCLESPSVKEEKKTKRLRKSLIKDLNDTEN EGKKEKPKKGSQKKESKDKEEEGEADDCICISDAAEKDEKEDKMKQDFLQSGVSDVALGKKTSQATFSFGKAGFQMKKAT PTVTRVRKSAAGKEGANDSFGELPVSESTPLKDGEGKKKRGRKKKTEQIDVSVCEQDSDLDTSGISRRRSLRNQKADTXN YQTEKHGSPIRIRLTRYSKSSTSQDDTLSPSSQRKLAKKKAKLKRASTAQKLLEKAKRGKTLKPLICELGKKNKDKAETE KEQVAPSPVKTGRRRSARLSDRHKSMEEVLIVDDESEDDCYTPTKPKAGKRGRPKAKTSSCTPKKEVKAPQKLAPIFMKR GKKEEPVTPVKKVLDPEAEKRRRAFLMSDVPDELRRQAASVIMIADADYPPIPKINHVQQTGISDVLGGRDLWKLPEVIL NYRKDLNEGGWKMQSGTWGDNLITKTESTVDYTKIKTFTSHPKISESSIHLILSEIGRLNPVYPVKKMYSILREKKEDDL EEEVTEKNNKKASKPDDEDTKPKTRPRRSLRLRPVIEVIDVIGSPEKVNDTEEAQAEKQDSVPPTLVFTERYQPLNTSEV VGNTALLKKLKAWLVEWKHRVDKEARKARMLLMKKSKGKRPKEEEDSGPTGIGKTATVYALAQELGFKVFEVNASSCRNG KRILAQLQEATQSHQVSKNSVGGSNTPVKIDKKKEPGVDQKKKLPTAFTNLFKQAESQSKKDVPSKKAPKKEDGDSRKKK RKREEEEEEMSKSSKKKKKDQEKSVKKSAETEKVSGEVDSGKSLSLSSTSLILFDEVDIVFEQDKAFWAAVQSFMSTTKI PIILTSNDSKLHTKFEGRFEHYAFKIPSMVTSTIYLQLVCLVENIRTDRQDIYNLISLHNGDIRKALNTLQLWALSGGGC TFNQLAIKNIEPKSETQATVVQNSVEESSQSNITSVIDSYVKKDDDEDDDFVTIKPITKRRKPLLFDEDSNSLPPPLPDT CLSCDVSQPVIKHNEXVTKKESNIVEENVTPKESIKNMKEEVKSLSSLYKFYDTLAFTDVMRQVHEKSDLYGVSFGKEDF RGSISIGLEDQLVKYGSPLSSRELGASLCSELELRSLLDLRKRQGEILQSLDEVDEEAFSVPVTPCSISSVRNESARCVI SSKSDLKRVNDNIQSNVPLLLHCQPSVVAMDYTPTLRSMCKNEQIREAAKAKRSCLLLSSFSTPFTLESETSVEALFSTD QVCITCISQETANLT |
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