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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_4699.1_01803
Locus scaffold4699.1 : 27459 ... 46935 : -
To GenomeBrowser scaffold4699.1:27459..46935
Genes list of scaffold scaffold4699.1
Synonym pfu_aug2.0_150.1_00319

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_4699.1_01803.t1 1 1 KIAA1430 26 122 1.8e-22 79.5 2.1e-26 3.1e-22 78.8

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_4699.1_01803.t1 gi|326429487|gb|EGD75057.1| 3.0e-17

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_4699.1_01803.t1
Definition-
>pfu_aug1.0_4699.1_01803.t1
atgccgggtccgccaggattctcttgtccaagtaaaatcctctacaaatatgaacaggatcgggcctaccgactccatag
acaaaagattaatgaatccagagctacggtgaaaaacaccaaacctaaaaaatatccacatctcattctccagctcaaga
aaatacagcttgaggaagaaaggcaagcagaggttgaccatgaaaataagctgcttctacagaaaatgacaaggatcatg
aaagaaaaacctaacgtagatacgtggaatgaatatgaggccaaaagtttgaatatgcctgaaagggaacgagtaaatcg
tgaaatacagatggaaaatattggaattgccagacgtctggagaaaacaaaaccagttattagatcaaacaaattgtcta
taaggtatcacacaggtggggactcctataaaacatcgaaaagtgaggacggcaaagataggaaggtcaaggtcacattt
aagctgaaattaagcataagacatactcatatttctaaggtcaaggtcacatga

Protein
Protein IDpfu_aug1.0_4699.1_01803.t1
Definition-
>pfu_aug1.0_4699.1_01803.t1
MPGPPGFSCPSKILYKYEQDRAYRLHRQKINESRATVKNTKPKKYPHLILQLKKIQLEEERQAEVDHENKLLLQKMTRIM
KEKPNVDTWNEYEAKSLNMPERERVNREIQMENIGIARRLEKTKPVIRSNKLSIRYHTGGDSYKTSKSEDGKDRKVKVTF
KLKLSIRHTHISKVKVT

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