Gene
| Gene Model ID | pfu_aug1.0_47.1_50583 |
|---|---|
| Locus | scaffold47.1 : 74812 ... 85905 : - |
| To GenomeBrowser | scaffold47.1:74812..85905 |
| Genes list of scaffold | scaffold47.1 |
| Synonym | pfu_aug2.0_996.1_21331 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_47.1_50583.t1 | 1 | 1 | DEP | 29 | 99 | 1.0e-10 | 41.1 | 4.0e-14 | 3.0e-10 | 39.7 |
| pfu_aug1.0_47.1_50583.t1 | 2 | 1 | RhoGAP | 249 | 297 | 2.4e-08 | 33.7 | 9.9e-08 | 0.00074 | 19.1 |
| pfu_aug1.0_47.1_50583.t1 | 2 | 2 | RhoGAP | 636 | 672 | 2.4e-08 | 33.7 | 1.5e-05 | 0.11 | 12.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_47.1_50583.t1 | gi|344278810|ref|XP_003411185.1| | PREDICTED: DEP domain-containing protein 1A isoform X1 [Loxodonta africana] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_47.1_50583.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_47.1_50583.t1 atgaatgacggaaggttgcccttttcagggccatatagagctacaaagttgtggaatgatgttatacaaacattcagaca ggagatgccagtcagtaggcatagacgatacatgaagacttatgacaaatgtttcaccgctggagaggcagtagattggc ttcatgagtacctcaaatctaactgtaattttggtcctgatgtcaccagagctcagacattacagttactacagaagttc catcgtgcacgagtgatcgaagacgtgaggggtggaaagcagaatcgtcccgatgttacagacaacggcagattgttcag atgtagaattccatctcccacaaagccctttaacacattatctaggactccattcagtaatagaactgatttgataaaca aggaccaggtgactaatacaggacctcctgtaaagcttaacctggataaacacctggaatgtcagattcccagctcacaa gctatcccagagtgccatctcgtctccaagcaaccatctgctgcagatatagaaaatatatggaagcacaccactcttga caagttacagcaggttcttcacaccagagatttatcagatgtcctggatagcagctttgttgtcggacgtaatatcatgc acaactgtctatacatcaacaaaagtggaattgtcaccaatatccagcctaaagggcctcacaaggttgatgacaattta ccaagttaccctggtttcgagagggacgtgttccgtgtggtgaaggattacttttgtggtcttcctgagccgttatttac gtatgagatgtatgaagtagtcattaatgtctttgttgctgctgagggcaaatcataccagagagaatcacaagctcaac tgtatgaggacagccctgaggctcttacgtcatttgagtcagtagaaaatctcatgttggatttaacaaacactgtacct agtggcaagagttacaggtcaacccctgatgctcgactaaatcgcatgaatagtgcctccaccattgatctatctcctat tcatcctgtttacgatagtgtttcaaaggatagaactcttaggagatgtgcatcaagcggaaatgtaaaatatgccaaat atgagactgcctttggaccagaaaatagaacaattacgcgagtgtactacaaaaatggagtcgcaaccgactacagttac catgatgaggaagattccttgtataagactcctgtcgaaactcattttgaatattcgtctgatatcagcgataaactcca agaaccaattattgatagctatgatacaaatgatgctgaaatgaactttgctagagtgaaacctatgagaagaaaaaaga ctaatgaagaccccagcaaagaagatgtacatcatcgcaagagctatggttactctgttgccgctgtgatcaaaccctgt aaacaagatgctcgttcacaaagacgttctgtaggtagtcagcttcctgatgacaaagtgagccgtctagaaggatacac aaaaattaaagtccgagccagacatcattcaagtaaagtggagaaacctcctccttcgtataactcgctctttcccgaca attatcaaccagtgatcaacggaaagcagaaaccaaggacaataccaaggtcaaagtcaagtcattcactacacaatgtc aatgatggatgcacgcttcctgggtatcatatgacagagaggctcgactcggcgtcaaatatgatacacaagcccattgg tcagtacagccaagggaagagtacagaacccctgcctgggcgcagtcttagcatgactgatttacttcatggccagactg taggcaatagtggactgaagagaagcagccatgctgaagatttatcagaagatgacatcctggagaggacaagagacgca cttcagctcgtctgtctgttattaccaccggcaaatagacgtaaactacatctcctgctgaaactaatgagtaagatggc tgacaatagggaattacacctggatgataaacagaccactagaaccttgttattggagacgttttcccagtgtatactga gttgtcaggatgagttggagatggaggatttactggtgatgcgtatcgtctcgtttctgatggacaaccacacccatgtc atggctgtaccggcagatctcaagactgccgctgaggataaactcacaaaatctaagtcacagtgtaggtttacttaa |
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Protein
| Protein ID | pfu_aug1.0_47.1_50583.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_47.1_50583.t1 MNDGRLPFSGPYRATKLWNDVIQTFRQEMPVSRHRRYMKTYDKCFTAGEAVDWLHEYLKSNCNFGPDVTRAQTLQLLQKF HRARVIEDVRGGKQNRPDVTDNGRLFRCRIPSPTKPFNTLSRTPFSNRTDLINKDQVTNTGPPVKLNLDKHLECQIPSSQ AIPECHLVSKQPSAADIENIWKHTTLDKLQQVLHTRDLSDVLDSSFVVGRNIMHNCLYINKSGIVTNIQPKGPHKVDDNL PSYPGFERDVFRVVKDYFCGLPEPLFTYEMYEVVINVFVAAEGKSYQRESQAQLYEDSPEALTSFESVENLMLDLTNTVP SGKSYRSTPDARLNRMNSASTIDLSPIHPVYDSVSKDRTLRRCASSGNVKYAKYETAFGPENRTITRVYYKNGVATDYSY HDEEDSLYKTPVETHFEYSSDISDKLQEPIIDSYDTNDAEMNFARVKPMRRKKTNEDPSKEDVHHRKSYGYSVAAVIKPC KQDARSQRRSVGSQLPDDKVSRLEGYTKIKVRARHHSSKVEKPPPSYNSLFPDNYQPVINGKQKPRTIPRSKSSHSLHNV NDGCTLPGYHMTERLDSASNMIHKPIGQYSQGKSTEPLPGRSLSMTDLLHGQTVGNSGLKRSSHAEDLSEDDILERTRDA LQLVCLLLPPANRRKLHLLLKLMSKMADNRELHLDDKQTTRTLLLETFSQCILSCQDELEMEDLLVMRIVSFLMDNHTHV MAVPADLKTAAEDKLTKSKSQCRFT |
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