Gene
| Gene Model ID | pfu_aug1.0_47.1_50584 |
|---|---|
| Locus | scaffold47.1 : 88536 ... 108837 : + |
| To GenomeBrowser | scaffold47.1:88536..108837 |
| Genes list of scaffold | scaffold47.1 |
| Synonym | pfu_aug2.0_996.1_21330 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_47.1_50584.t1 | 1 | 1 | Oxysterol_BP | 322 | 661 | 0.0 | 260.8 | 0.0 | 0.0 | 259.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_47.1_50584.t1 | gi|291398906|ref|XP_002715147.1| | PREDICTED: oxysterol-binding protein-related protein 9 isoform X5 [Oryctolagus cuniculus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
| mantle | 1 |
| mantleEdge | 1 |
Transcript
| Transcript ID | pfu_aug1.0_47.1_50584.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_47.1_50584.t1 atgtctgcctacccgtcaagctggatccaaagagaacggaatacaagtccgtcagctcgtgcgctgccgcggttcaatct gattggcttagaacatggcttgacccttcgtgcccccatattggcatatccttacgcggtgttaaagggagcagttattg gtatagatgatgaggatgacagtacatttacaatcactgtggatcagaaaacattccattttcaagctcgtgatgcagat gaaagggaaaaatggatacaaggactagagaatgctatagaaagacactcacatgtagctaagaagcaagaggttatggc tgtagtaacaccggcagactttgataggaagttagcggaaacggatgcttatctacagatcatgatagagcaagttaaga ctttagagacaaggatagaagcttgtcaggatgtggcagcaaaggagaaatataatgtcatcaaggtcactgctgaggca atgattgaagcaatcaaacattccattgttatgctgcagatatcaaaggaaagtttaaaaggccctgtgatgaatggaac aatgcatgagccaatcatgacagtgaatgcagactatgatcattttggtgctggtgcagtaggagatgagcgtagtgatg tggacgcggtacccgttcctgagacttcctattccagtagtgaggatgaagatttctttgatgcagaggaattcaaagga aatactccaaaacaaagccctacgtctcatatgaagcctgtagctggaagccttacccctgggagtgatgtatcaactgt gaccacacccagtacagatggagaggagaaagaagagccccaggagaaaagctccactcccccgcctgtcatagcagcta aagatgactactttgatgagctatatgatgatcaagacaatgaggacttgggatccctagagaagcacggtagtatcata gcccatctgttatcccaggttcgaattggtatggatctgacaaaagttgtactacctacgtttatcttagaacggaggtc cctcctcgagatgtatgcagacttctttgctcacccagacctttttgtgcaaatagtagatatgaagaccccacaggata ggatgatacagctagtacgatggtacctgtctgcctttcatgcagctagaaacagtgacgtagctaagaaagcgtacaat cccatacttggtgaaacctttgtctgtcactggaatatacctgatgctgagaataattcagataaagttgatgatggacc atgtcactgggctcataaaaacaatctggcttttatatcagagcaggtctctcaccatcctcctatatcagcgttttatg cggagcattataacaagcgtatatctttggacggctatatatggaccaagtctaaatttctgggtttgtctatcggtgtt cacatgataggtcaggcagtggtgtccgttatagactatgatgaggaatacatactgacgtttcctaatggatatggaag gtccatattgacagttccttgggtggagttaggaggaaaagtgaatatatcatgtgccaagaccggatacactgctaatg ttacattccatacaaagcccttttatggagggagaaagcacaaaataacaagtgaagtattcgctccaaacgagaaaaag ccaatagtgagcattgacggagaatggaatggagttatgtatgctaaatatgctacagggaggaatgaaacatttgtcga caccaaaaagatggcagtggtcaagaagcaagtacgtccaagagaagaacagggggagtatgaatctagaaaattgtggc aagaggtaacatacaaccttaaattcaacaatgtcgaaaaagcaacggagcataaacagttcctagaacagagacagaga gaggaggctaaagacaggaaagaaaagggagttaaatgggagacgaagtttttccatgaggtaggggaacactgggtata tgacagaccgttactgaaaagaatgggaaaaagtgcatcaacaatgagtgcctcctga |
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Protein
| Protein ID | pfu_aug1.0_47.1_50584.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_47.1_50584.t1 MSAYPSSWIQRERNTSPSARALPRFNLIGLEHGLTLRAPILAYPYAVLKGAVIGIDDEDDSTFTITVDQKTFHFQARDAD EREKWIQGLENAIERHSHVAKKQEVMAVVTPADFDRKLAETDAYLQIMIEQVKTLETRIEACQDVAAKEKYNVIKVTAEA MIEAIKHSIVMLQISKESLKGPVMNGTMHEPIMTVNADYDHFGAGAVGDERSDVDAVPVPETSYSSSEDEDFFDAEEFKG NTPKQSPTSHMKPVAGSLTPGSDVSTVTTPSTDGEEKEEPQEKSSTPPPVIAAKDDYFDELYDDQDNEDLGSLEKHGSII AHLLSQVRIGMDLTKVVLPTFILERRSLLEMYADFFAHPDLFVQIVDMKTPQDRMIQLVRWYLSAFHAARNSDVAKKAYN PILGETFVCHWNIPDAENNSDKVDDGPCHWAHKNNLAFISEQVSHHPPISAFYAEHYNKRISLDGYIWTKSKFLGLSIGV HMIGQAVVSVIDYDEEYILTFPNGYGRSILTVPWVELGGKVNISCAKTGYTANVTFHTKPFYGGRKHKITSEVFAPNEKK PIVSIDGEWNGVMYAKYATGRNETFVDTKKMAVVKKQVRPREEQGEYESRKLWQEVTYNLKFNNVEKATEHKQFLEQRQR EEAKDRKEKGVKWETKFFHEVGEHWVYDRPLLKRMGKSASTMSAS |
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