Gene
| Gene Model ID | pfu_aug1.0_47.1_50586 |
|---|---|
| Locus | scaffold47.1 : 140053 ... 149475 : - |
| To GenomeBrowser | scaffold47.1:140053..149475 |
| Genes list of scaffold | scaffold47.1 |
| Synonym | pfu_aug2.0_996.1_21328 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_47.1_50586.t1 | 1 | 1 | RRM_1 | 266 | 327 | 4.1e-11 | 42.3 | 1.8e-14 | 6.7e-11 | 41.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_47.1_50586.t1 | gi|72087247|ref|XP_787816.1| | PREDICTED: polymerase delta-interacting protein 3 [Strongylocentrotus purpuratus] | 9.0e-23 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_47.1_50586.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_47.1_50586.t1 atgtcacacgaacgatcaataacaatgcaggccaaaatacagcaacagatttccaaattacaagaacgattggtggcagt acaaaaatttggtgggaatgttagtggtttatcaaatgctgtgcaagtatccggaaataatctaacaataacacgaaaca taggagcctctaatcccgtacaacagaattcacatctcaccaaggtcatctcaaacataccagtccatacatcaacaccc ccagtgcccatggcagcccctaattatcctgtcatccagtacacggccgagtcacacagtccatatcaacaacctgtctc gtatcagtacagccagcctcccccacccctccccacacatcacgtccctcagcccacatactacatgggcacagagaaca catattatgatgacttagaggaggaggaggaggatgagctggaacttgaggatcccgaccctgtggggataaaaccctcc acatacctagtggagaaaacattgacagtaaagagacctcagctattgtctacaaaatctaacgttatctcgctaaaatc aacaggatcaaaaacgacaaagattcagcagcaagctttatcaatgacaagtgtggcaactaagcgtaaggcaccagtag ttcaaaataccggtccactgaagtttgccaaatcctctgtatccagtgattcaggagggggaggtggtaaacgccttaag gttattaagcaggaggaagacatggagacagattcagaagccaaggttgtagctaattcaccacttggcttccgagtgat catatccaatcttcatactgttgtctcacaggatgatataattgaattgtttggtgctgttggtccaatgaaaagagctc ggctggtaaaggctggcgtagcagaggttgtatatacacagaaaggggacgcacaaaaagccatacagaagtatcataac agagaattagatggtttaccgatgacagttaagatgtacacacctccggctccctcaccaaagaaaacaccagagaatat tctgggcaatgttaaagacgtagagggaccacttagactaggaaaagatgcaccaaagaagagttcagatttggacatgt ctgttctacacaaagtattgtttaaggcagggacgccctcggggtctaagccggtcacattcacggtcaaagtatag |
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Protein
| Protein ID | pfu_aug1.0_47.1_50586.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_47.1_50586.t1 MSHERSITMQAKIQQQISKLQERLVAVQKFGGNVSGLSNAVQVSGNNLTITRNIGASNPVQQNSHLTKVISNIPVHTSTP PVPMAAPNYPVIQYTAESHSPYQQPVSYQYSQPPPPLPTHHVPQPTYYMGTENTYYDDLEEEEEDELELEDPDPVGIKPS TYLVEKTLTVKRPQLLSTKSNVISLKSTGSKTTKIQQQALSMTSVATKRKAPVVQNTGPLKFAKSSVSSDSGGGGGKRLK VIKQEEDMETDSEAKVVANSPLGFRVIISNLHTVVSQDDIIELFGAVGPMKRARLVKAGVAEVVYTQKGDAQKAIQKYHN RELDGLPMTVKMYTPPAPSPKKTPENILGNVKDVEGPLRLGKDAPKKSSDLDMSVLHKVLFKAGTPSGSKPVTFTVKV |
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