Gene
| Gene Model ID | pfu_aug1.0_4701.1_08971 |
|---|---|
| Locus | scaffold4701.1 : 29296 ... 46309 : + |
| To GenomeBrowser | scaffold4701.1:29296..46309 |
| Genes list of scaffold | scaffold4701.1 |
| Synonym | pfu_aug2.0_282.1_07302 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4701.1_08971.t1 | 1 | 1 | PA | 170 | 234 | 8.7e-10 | 38.2 | 4.9e-13 | 1.8e-09 | 37.1 |
| pfu_aug1.0_4701.1_08971.t1 | 1 | 1 | Peptidase_M28 | 372 | 569 | 3.5e-10 | 39.8 | 2.4e-13 | 8.8e-10 | 38.6 |
| pfu_aug1.0_4701.1_08971.t1 | 1 | 1 | TFR_dimer | 639 | 752 | 6.2e-21 | 74.2 | 2.9e-24 | 1.1e-20 | 73.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4701.1_08971.t1 | gi|335294667|ref|XP_003129798.2| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4701.1_08971.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4701.1_08971.t1 atggacacccatcagtaccgtcgtgtggccgttattgcattaattgcaattttatgttttgttataggtgttctcattgg atatttttccatgaaaaaggaacatctaaaatattgtaaagatgaaaatcaaaaggatgcctacccaaccaattttaact ttctcaatagaggtgctgatatgtccatatctaagaagattccaggcttagttagtagacagagactggacgaaacgata cggtttcttaccgaaaaaccacgatatgcagggacagagacccaagctgaggttactaggtttgtccacaatacattcct gaggcatggattccattcagagagggtagcctataatgttctgttatcgtatccacgaccaggggcgaacagcacgatca cactcatagatgatggtggcaacgaattacacaagacgtcaccgtttgaagaaagtgtgggaaatataaaagactatgat gatagctttaaagccttcaatgcttactcaccaagtggtgaagtagagggcgacttgatttatgcagagtatggtaggaa gcttgattttgaaagactgaaggaaaatggaattgacgtcacgggtaaaatcgccatcataaagtatgggaaaatattcc gtggtaacaaggtggagtttgctgctaaggcaggggcagttggtgttatcttatattctgacccaggagattacggggtt tgttgtgaggggataaatccttacccaaagactgctttcctgcctctgacaggaatgcaaagaggagcaatcgttttaac gaaaggtgatcaaacaacccctggctatccttctacagagtatgcctacagattgaacgaaattgaactgaattcacaag tacctcaaattccatcgcaaccaattacagccacggatgccttcaaaatgttaagggaattgaatggcgaagacatagta caggactcattaggacgatttaacttatcatttccacatggaacaggcttaaaacctgggaggaaggtaaatatggttgt caaaaacatcaacgagatgcgtaaaatcgagaacgttatcggaacaatcagaggaagcatagaaccagaccgttacgtca tatttggaggtcacaaggacgcctgggtgtatggtggtgcagatccaatgtcagggacaaacattgtactagaagtgtca cgtgtgatcggagaacttgtcaatcaagggatcactttgtccgttgtccgtctgtccgtctgtccggtggaagccaagaa gatcaatcattatttgcagctggatggagaagaatatggtctaataggatcgtttgaatgggttgaggagaacatggcct ggattcgtgacaaagtagtggcttatataaatgttgacagttctgtaacaggtaatttgcacacctatctcaggagcgtt ccattgctgaaaaaagtttttgtagaaagtacaaagatagctgcagatccaagtggacagtatgattcagtgtatgataa gtggcttgacgaagagcacggggacattcaggccagaaaaatgggtggaggaagtgatttcgtaccatttcttgcgcatg gaataccaaccatgtatccaaagatctatggcatttctaaaggaatcaacgggcaagagtggagggcaagaagcactccc ctatatcatactcgctatgagacctaccatttcatgaaaatgatcgatccggaaatgaagaattttgctgccatgacaac tatccttactgacgttttacgacaattagcggattccatgatattaccgttcgatctgaaagcgtttctcatagatttga aaaagtcagtcaaggttgttgttgatgttgtttttatacaaaacaccaaagtagacaagaaatatcaagagggacttcaa aaaggtatcgagaatgtagatgaagccattgcaaagtttcagaatgatatagctgcagtcgataaaaataacccattagc tgttcggagagtaaatgacaaaatgatggcacttgaaaaagtattcatagatggtaacgggctacctgatagacctcaat ataagcacttgctgcgttctcctgggttcacagaccattacggtggatcatcgttccctggtgtgatggtgttgtatgat atgtacagtaaaaacaagacagagacaaacagacgacggctagagaaacatttgtctgttgtagtacatactttattttc tattgtgaaaattttagatatggagtaa |
|
Protein
| Protein ID | pfu_aug1.0_4701.1_08971.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4701.1_08971.t1 MDTHQYRRVAVIALIAILCFVIGVLIGYFSMKKEHLKYCKDENQKDAYPTNFNFLNRGADMSISKKIPGLVSRQRLDETI RFLTEKPRYAGTETQAEVTRFVHNTFLRHGFHSERVAYNVLLSYPRPGANSTITLIDDGGNELHKTSPFEESVGNIKDYD DSFKAFNAYSPSGEVEGDLIYAEYGRKLDFERLKENGIDVTGKIAIIKYGKIFRGNKVEFAAKAGAVGVILYSDPGDYGV CCEGINPYPKTAFLPLTGMQRGAIVLTKGDQTTPGYPSTEYAYRLNEIELNSQVPQIPSQPITATDAFKMLRELNGEDIV QDSLGRFNLSFPHGTGLKPGRKVNMVVKNINEMRKIENVIGTIRGSIEPDRYVIFGGHKDAWVYGGADPMSGTNIVLEVS RVIGELVNQGITLSVVRLSVCPVEAKKINHYLQLDGEEYGLIGSFEWVEENMAWIRDKVVAYINVDSSVTGNLHTYLRSV PLLKKVFVESTKIAADPSGQYDSVYDKWLDEEHGDIQARKMGGGSDFVPFLAHGIPTMYPKIYGISKGINGQEWRARSTP LYHTRYETYHFMKMIDPEMKNFAAMTTILTDVLRQLADSMILPFDLKAFLIDLKKSVKVVVDVVFIQNTKVDKKYQEGLQ KGIENVDEAIAKFQNDIAAVDKNNPLAVRRVNDKMMALEKVFIDGNGLPDRPQYKHLLRSPGFTDHYGGSSFPGVMVLYD MYSKNKTETNRRRLEKHLSVVVHTLFSIVKILDME |
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