Gene
| Gene Model ID | pfu_aug1.0_4703.1_52341 |
|---|---|
| Locus | scaffold4703.1 : 25347 ... 40045 : - |
| To GenomeBrowser | scaffold4703.1:25347..40045 |
| Genes list of scaffold | scaffold4703.1 |
| Synonym | pfu_aug2.0_2170.1_02023 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4703.1_52341.t1 | 1 | 1 | zf-C4 | 20 | 88 | 1.9e-22 | 79.2 | 2.6e-26 | 1.9e-22 | 79.2 |
| pfu_aug1.0_4703.1_52341.t1 | 1 | 1 | Hormone_recep | 343 | 498 | 9.8e-14 | 50.9 | 3.5e-17 | 2.6e-13 | 49.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4703.1_52341.t1 | gi|118344432|ref|NP_001072038.1| | nuclear receptor [Ciona intestinalis] | 4.0e-20 |
Transcript
| Transcript ID | pfu_aug1.0_4703.1_52341.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4703.1_52341.t1 atggataaaacaaagtcaataggccaacggaagaagaagagccagttggtgctgcctccatgccgtgtctgtgaagggaa cgctacaggcatacattatggtgtccttacctgccagggatgtaaggcttttttccaacgctaccagaaaagaaaagagc cgtacgtgtgttccagaaacgggaactgtgatatagtggcccgtaaaaggggtatctgctcggcatgtagggtagaaaaa tgtacaaggcttggaatgtctaaaacaggtattcgccttggccgatacactctcactgagagaacggaaaccataaagga agtaaaaagtatagcagtaaaaggaacgcggaaaacctgtaacgtaaaccacaatccgaatcaaagatctcaaaaactat ttaatttgctcttagataaacttaaggatattgaaaaagaacagatagatacaatttgctggtgcgctaagatggagaag gaggagaaatcaacatcattggaggagtgtaccttctcaaatcccgacaacaggggctctgttggcacagaagattctgt gttaactcataccgacgatgtccatctacatgtatgtgatgatctagagtttgattctccgtgtttacaagatcttgtat ttaatatgggtcctccaatttccccgcaatctgtctccacttttctacagaatacagaaaatgccatgtacatagatttt atccaggaagacagttgtagcgtgattcctgtttccaacaataacccaaaatgtatagaagaactaacagaatcttatct aaggatgattgtagcacccgatctgtctactgaggacatcaaagacatgctgaagttgaaaaatgagaaatataaagaga aaactcaaatatttggagagatgaaagcattgtcactagaagaatatcgatctatacatcaactaacggggttagacgtg gatgggagattggaactggtgaagaaactcgctattttacaaagagaatcgtggagacaacgcttcaactttgccgtaaa aatcccaggttttgtttcattgcataatgaggatcaagaatcacttattatggcctcagcgtttgaatgtgagctactgt gttgttatcgtggtgtagaccctgagcttggcatggtattgctgaaaactggtgatgtgtttcatatagaccaactcagt ggaatgttcgaatcaaacgaaaagtgcatgttaaacttgaaaatgtgcaagaaaattcaagacttagatctaacgaatca ggagctagccttatgcctaggaataaccctgacatttcaagatagacgaagactcagaaaccctggtaatgttgaagaaa tacagctgcatctggtttcacagttacaacagctgctgcaacagcgtcagtccaccaaggcgtctagtatcttctacaag atcatcgatatgctcagtaacctccgagggttcacagaggaaactcgcaagtctttcagcaaactttaccaggatgaatt caccagacagatatgtccctatgtaccagcaacatgtttaatagaatactga |
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Protein
| Protein ID | pfu_aug1.0_4703.1_52341.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4703.1_52341.t1 MDKTKSIGQRKKKSQLVLPPCRVCEGNATGIHYGVLTCQGCKAFFQRYQKRKEPYVCSRNGNCDIVARKRGICSACRVEK CTRLGMSKTGIRLGRYTLTERTETIKEVKSIAVKGTRKTCNVNHNPNQRSQKLFNLLLDKLKDIEKEQIDTICWCAKMEK EEKSTSLEECTFSNPDNRGSVGTEDSVLTHTDDVHLHVCDDLEFDSPCLQDLVFNMGPPISPQSVSTFLQNTENAMYIDF IQEDSCSVIPVSNNNPKCIEELTESYLRMIVAPDLSTEDIKDMLKLKNEKYKEKTQIFGEMKALSLEEYRSIHQLTGLDV DGRLELVKKLAILQRESWRQRFNFAVKIPGFVSLHNEDQESLIMASAFECELLCCYRGVDPELGMVLLKTGDVFHIDQLS GMFESNEKCMLNLKMCKKIQDLDLTNQELALCLGITLTFQDRRRLRNPGNVEEIQLHLVSQLQQLLQQRQSTKASSIFYK IIDMLSNLRGFTEETRKSFSKLYQDEFTRQICPYVPATCLIEY |
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