Gene
Gene Model ID | pfu_aug1.0_4712.1_37950 |
---|---|
Locus | scaffold4712.1 : 25684 ... 37625 : - |
To GenomeBrowser | scaffold4712.1:25684..37625 |
Genes list of scaffold | scaffold4712.1 |
Synonym | pfu_aug2.0_2086.1_21926 |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | Pifuc-5-HT4-like |
Description | Reciprocal BLASTP best hit to NCBI Accession AEA76357.1, 5-HT4 receptor (Aplysia californica) |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4712.1_37950.t1 | 1 | 1 | 7TM_GPCR_Srsx | 69 | 348 | 2.6e-10 | 39.9 | 1.3e-13 | 5.0e-10 | 38.9 |
pfu_aug1.0_4712.1_37950.t1 | 1 | 1 | 7tm_1 | 73 | 334 | 0.0 | 230.4 | 0.0 | 0.0 | 230.0 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_4712.1_37950.t1 | gi|327420566|gb|AEA76357.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues | |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_4712.1_37950.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4712.1_37950.t1 atgaaaccaactgacataaagttgtattcgaatgacagctatgtcttcccagggatgtacaactttacaactaacacgtc tacagaccagctgacgtcaggattgaattgtgacgtcattttagcggataaagctccgcctccacctgtttattccaagg aggtcagtacgttcataggagctgtactttcggtgttccctttagtgacactgtccggaaattccctagttatcatagct gtttttacgcataaacggctaaggacgattaccaatgccttcgtcgtgtcgctgtccgtcgccgacttcttagtggctct tttagtgatgccgttcgctgtatatcaacaattcaacgacaaaaaatggggtttaggtcactatatgtgtaagatagtca cgtgtctagatataatgaccaccacgtcgtccataatgcacctgtcctgtttggccgtggacaggtacctggctatatgc cggccatttgtacacgagagactcacaaataggattgtatgtgctatgttaacatcatgttggatattacccatgttcat ttcgtttcttccaatattaaatgaatggaatttaataggaatagaggatgtgcatacgtgtatgttcggtgaatacgaca cacactgtggtctgatagtgaacattcccttcgcgcttatatgttctaccatcgcattttacattcccgccatttttatg atcatctgtaatatcaaaatatacctcgcagcaagaaagcaagcacaccatatcagaacattagaagcatcattacataa acataacaaaaggaaattaaagcaggagactaaggccgctaaaactattggtataattatgggttgtttctgtgtctgct ggtttccgtttttcatagtaaacgttatagacccgctgataggccataaaataacgtatgtcccgtggacaatagctcta tggttaggatatctcaattccatgctaaatccatttctctactataatttcaatcgatcatttaaaacggctttcaatcg tttattgacttgtaaggtgtgtcagggagtgcgtgagttcgaggagacggatccgcccagcaccaccagctaccataacg gcacgggacaccactgtaacgccttgttacccacagaaatgtccactttaaccctgtgccattaa |
Protein
Protein ID | pfu_aug1.0_4712.1_37950.t1 |
---|---|
Definition | - |
>pfu_aug1.0_4712.1_37950.t1 MKPTDIKLYSNDSYVFPGMYNFTTNTSTDQLTSGLNCDVILADKAPPPPVYSKEVSTFIGAVLSVFPLVTLSGNSLVIIA VFTHKRLRTITNAFVVSLSVADFLVALLVMPFAVYQQFNDKKWGLGHYMCKIVTCLDIMTTTSSIMHLSCLAVDRYLAIC RPFVHERLTNRIVCAMLTSCWILPMFISFLPILNEWNLIGIEDVHTCMFGEYDTHCGLIVNIPFALICSTIAFYIPAIFM IICNIKIYLAARKQAHHIRTLEASLHKHNKRKLKQETKAAKTIGIIMGCFCVCWFPFFIVNVIDPLIGHKITYVPWTIAL WLGYLNSMLNPFLYYNFNRSFKTAFNRLLTCKVCQGVREFEETDPPSTTSYHNGTGHHCNALLPTEMSTLTLCH |