Gene
| Gene Model ID | pfu_aug1.0_473.1_15075 |
|---|---|
| Locus | scaffold473.1 : 1 ... 8855 : - |
| To GenomeBrowser | scaffold473.1:1..8855 |
| Genes list of scaffold | scaffold473.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_473.1_15075.t1 | 6 | 1 | zf-H2C2_2 | 368 | 388 | 1.4e-19 | 69.3 | 0.0066 | 9.8 | 6.6 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 1 | zf-C2H2_jaz | 379 | 399 | 2.4e-15 | 56.1 | 0.00013 | 0.2 | 11.8 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 1 | zf-C2H2_4 | 380 | 402 | 1.2e-15 | 56.6 | 0.00063 | 0.94 | 9.9 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 1 | zf-C2H2 | 380 | 402 | 4.5e-15 | 54.9 | 0.00049 | 0.73 | 10.2 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 1 | zf-met | 380 | 399 | 2.7e-09 | 36.8 | 0.015 | 22.0 | 5.4 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 1 | zf-C2H2_6 | 380 | 402 | 1.7e-06 | 27.7 | 0.0018 | 2.7 | 8.0 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 2 | zf-H2C2_2 | 395 | 419 | 1.4e-19 | 69.3 | 6.6e-10 | 9.8e-07 | 28.7 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 2 | zf-C2H2_6 | 407 | 430 | 1.7e-06 | 27.7 | 7.9e-07 | 0.0012 | 18.7 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 2 | zf-C2H2_4 | 408 | 430 | 1.2e-15 | 56.6 | 2.0e-05 | 0.03 | 14.6 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 2 | zf-C2H2_jaz | 408 | 428 | 2.4e-15 | 56.1 | 1.3e-05 | 0.019 | 15.0 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 2 | zf-C2H2 | 408 | 430 | 4.5e-15 | 54.9 | 1.6e-05 | 0.024 | 14.9 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 2 | zf-met | 408 | 428 | 2.7e-09 | 36.8 | 3.2e-06 | 0.0047 | 17.0 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 3 | zf-H2C2_2 | 422 | 447 | 1.4e-19 | 69.3 | 2.0e-09 | 3.0e-06 | 27.2 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 3 | zf-C2H2_4 | 436 | 459 | 1.2e-15 | 56.6 | 2.6e-06 | 0.0039 | 17.4 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 3 | zf-C2H2_jaz | 436 | 457 | 2.4e-15 | 56.1 | 0.00028 | 0.42 | 10.8 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 3 | zf-C2H2 | 436 | 458 | 4.5e-15 | 54.9 | 3.9e-05 | 0.058 | 13.7 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 3 | zf-C2H2_6 | 436 | 447 | 1.7e-06 | 27.7 | 0.0021 | 3.2 | 7.8 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 3 | zf-met | 437 | 449 | 2.7e-09 | 36.8 | 0.0023 | 3.4 | 8.0 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 4 | zf-H2C2_2 | 452 | 477 | 1.4e-19 | 69.3 | 0.00011 | 0.16 | 12.3 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 4 | zf-C2H2_4 | 467 | 485 | 1.2e-15 | 56.6 | 0.0024 | 3.5 | 8.1 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 4 | zf-C2H2_jaz | 467 | 485 | 2.4e-15 | 56.1 | 1.3e-05 | 0.019 | 15.1 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 4 | zf-C2H2 | 467 | 489 | 4.5e-15 | 54.9 | 0.00056 | 0.83 | 10.1 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 4 | zf-met | 467 | 484 | 2.7e-09 | 36.8 | 0.29 | 430.0 | 1.3 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 4 | zf-C2H2_6 | 467 | 481 | 1.7e-06 | 27.7 | 0.37 | 560.0 | 0.6 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 5 | zf-H2C2_2 | 481 | 507 | 1.4e-19 | 69.3 | 0.0001 | 0.16 | 12.3 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 5 | zf-C2H2_6 | 495 | 507 | 1.7e-06 | 27.7 | 0.00064 | 0.95 | 9.4 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 5 | zf-C2H2_4 | 496 | 519 | 1.2e-15 | 56.6 | 1.7e-06 | 0.0025 | 18.0 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 5 | zf-C2H2_jaz | 496 | 517 | 2.4e-15 | 56.1 | 6.3e-06 | 0.0094 | 16.0 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 5 | zf-C2H2 | 496 | 519 | 4.5e-15 | 54.9 | 3.3e-06 | 0.0048 | 17.1 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 5 | zf-met | 496 | 517 | 2.7e-09 | 36.8 | 0.00045 | 0.67 | 10.2 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 6 | zf-H2C2_2 | 512 | 534 | 1.4e-19 | 69.3 | 5.7e-06 | 0.0085 | 16.3 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 6 | zf-C2H2_6 | 524 | 538 | 1.7e-06 | 27.7 | 0.0039 | 5.8 | 6.9 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 6 | zf-C2H2_4 | 525 | 547 | 1.2e-15 | 56.6 | 4.2e-06 | 0.0062 | 16.7 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 6 | zf-C2H2_jaz | 525 | 548 | 2.4e-15 | 56.1 | 0.00073 | 1.1 | 9.5 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 6 | zf-C2H2 | 525 | 547 | 4.5e-15 | 54.9 | 2.3e-07 | 0.00034 | 20.7 |
| pfu_aug1.0_473.1_15075.t1 | 6 | 6 | zf-met | 526 | 545 | 2.7e-09 | 36.8 | 0.00015 | 0.22 | 11.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_473.1_15075.t1 | gi|118090686|ref|XP_001232449.1| | 4.0e-28 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_473.1_15075.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_473.1_15075.t1 atgcattgtatggcgagatcacttactaaagactacacttggaaaggtatctatctggactgtgcggcgtttgccaaggc atgtccaggctgtgaccttggcagcccattgtcagatgaaatcagtcctgaggaagaggatgatgtagccaaatgcgcag aggagaactatagccatttgattagctatgtaaagaatggcaagttttcacccgatacggataccagtattcacagagca gttttagaagtggctaagtactttactttgagtcgtggtcaactgatgtataggagaggtccaaagagtggacttagatt ctttgaaatctctacaagaggaaagaaggctgcaataaaagatgctcatgaacttcaagatcaagatgagcaccttagtg cagatgagacgtacatgaatttgacgagtagttacctctggtacaggatgaaggacagtgttactgattacgtcaaacaa tgctgtaacaagagggctacagcacaaccagtgtccaagtcgaggatcaacttctataccaaatacttccaagaacagga aaagattaagttaggagacgtagccaacattagtacagggaattttaaaatgacagtgaacgacttggatgatatatttg cctccaccaatttatctgtacctcaggaaaacttcacaactacatcttactctgatacatccacgatactgacccagaat tcacagcctacaacttccaatcattccactacctcatttgtagagagtttgggtgaaagtcaacccgatacattgtcact tgacattgcggaatcgttaatccagcttacaggtgaagatcttccagaatcgcagcaaactgttcagagtgctacagaga ttactgatgtcacgtcctccgaccctgtaacggccagtgcggtcttctctatactaccacaggtgggggattccgattta gtacaggaaaaaggccatgtggatttaagtgctaacagcgtcattttgggcaagggaatgcaaacagaaacagaacatgt agaaggggattctgttacatcaaacatcactgttattccagattcaaatttccccattctcaaagatcataaatacgaca agaataccaaacagaggtttgaatgtaaaatctgtggtagaaaaataagaggaatgtctaaatatcaaacacatatgtat cagcacacaggtgtaaagccatatgaatgtgagctgtgtaaaaaaagattcacacatgtaaaatcattacgtatacataa gaggaaacatacgggtgtatatccatatctatgtaatatatgtgggaagagattcacttctgccgctggtatcagacttc acgtcaaaaatcacaataaaggtggcggaacagctattaagtgtgaatattgtgatcgtagcttcctaacgatgaataga tatgaaaaacacagacagtttaaacatctccaaaaggaagaagtcttcaaatgtaaagagtgtagtaaagttttcacaac aaaaagaagtatggtgcggcactacaagtcgtaccatcttggagtgagatatcacacttgtgaactgtgtggcaagagct tctttaggaaggagtacttcaccgctcacatgaataatcacaaaactcagaaggaggaagaaaccgacgagaccgatgtc aaggtcaaatccagggtgatcacggaaacgattgtcatggagtcagatcagccgggtgaatattactccatcagcgagcc tgcagacattgacagggacgccacaggaaacgtagattgcacttactatgccattccagtaagctctagtgacgatcagg gtggacaacttgtacctctacatctagaagatgagcgacagggaaaccagaatgttgtcagtataatacaggatggcaag gcgtcctcatcggagatatacgggtttacaggagtacagtatgagatagaatgtggggaggagggtattgacgcagagac attgtctgctataagtcttgttacacagggacatgcacttacacagccaaacttccaacaactctag |
|
Protein
| Protein ID | pfu_aug1.0_473.1_15075.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_473.1_15075.t1 MHCMARSLTKDYTWKGIYLDCAAFAKACPGCDLGSPLSDEISPEEEDDVAKCAEENYSHLISYVKNGKFSPDTDTSIHRA VLEVAKYFTLSRGQLMYRRGPKSGLRFFEISTRGKKAAIKDAHELQDQDEHLSADETYMNLTSSYLWYRMKDSVTDYVKQ CCNKRATAQPVSKSRINFYTKYFQEQEKIKLGDVANISTGNFKMTVNDLDDIFASTNLSVPQENFTTTSYSDTSTILTQN SQPTTSNHSTTSFVESLGESQPDTLSLDIAESLIQLTGEDLPESQQTVQSATEITDVTSSDPVTASAVFSILPQVGDSDL VQEKGHVDLSANSVILGKGMQTETEHVEGDSVTSNITVIPDSNFPILKDHKYDKNTKQRFECKICGRKIRGMSKYQTHMY QHTGVKPYECELCKKRFTHVKSLRIHKRKHTGVYPYLCNICGKRFTSAAGIRLHVKNHNKGGGTAIKCEYCDRSFLTMNR YEKHRQFKHLQKEEVFKCKECSKVFTTKRSMVRHYKSYHLGVRYHTCELCGKSFFRKEYFTAHMNNHKTQKEEETDETDV KVKSRVITETIVMESDQPGEYYSISEPADIDRDATGNVDCTYYAIPVSSSDDQGGQLVPLHLEDERQGNQNVVSIIQDGK ASSSEIYGFTGVQYEIECGEEGIDAETLSAISLVTQGHALTQPNFQQL |
|