Gene
| Gene Model ID | pfu_aug1.0_4732.1_16487 |
|---|---|
| Locus | scaffold4732.1 : 29705 ... 54535 : - |
| To GenomeBrowser | scaffold4732.1:29705..54535 |
| Genes list of scaffold | scaffold4732.1 |
| Synonym | pfu_aug2.0_5.1_16670 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4732.1_16487.t1 | 2 | 1 | RVT_1 | 242 | 405 | 2.8e-15 | 56.2 | 4.8e-18 | 2.4e-14 | 53.2 |
| pfu_aug1.0_4732.1_16487.t1 | 2 | 2 | RVT_1 | 450 | 494 | 2.8e-15 | 56.2 | 0.077 | 380.0 | 0.2 |
| pfu_aug1.0_4732.1_16487.t1 | 1 | 1 | rve | 770 | 875 | 4.7e-17 | 62.2 | 3.0e-20 | 1.5e-16 | 60.5 |
| pfu_aug1.0_4732.1_16487.t1 | 4 | 1 | WD40 | 1097 | 1130 | 3.4e-22 | 77.4 | 2.2e-09 | 1.1e-05 | 25.1 |
| pfu_aug1.0_4732.1_16487.t1 | 4 | 2 | WD40 | 1148 | 1164 | 3.4e-22 | 77.4 | 0.28 | 1400.0 | -0.6 |
| pfu_aug1.0_4732.1_16487.t1 | 4 | 3 | WD40 | 1178 | 1205 | 3.4e-22 | 77.4 | 4.4e-06 | 0.022 | 14.6 |
| pfu_aug1.0_4732.1_16487.t1 | 4 | 4 | WD40 | 1215 | 1247 | 3.4e-22 | 77.4 | 1.8e-12 | 8.9e-09 | 34.9 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 4 |
| egg-4cell | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| mantle | 3 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4732.1_16487.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4732.1_16487.t1 atggctgcattcgtaacgcttgtgcagaactctgttctgattgttccatttgttctgcctttcgaatgcgatagaacaga tggaacagatccaatatggctgaaaaggcagcacttgaacagcgacgacagttattcagactcgagtgacgacactgttg attattggatgacaccggtaaaatatggctcgaagaaaaacataaaagcacacatgattgtaaacaatacggatgttcat ttccaacttgactgtggtgccgaaattaacaccatatgtatgaaatatgtaaaaaaggaacaagttcgacctacatcagc cgttctgcgcatgtacaacaacactaaacttggtccactaggagaaacagatcttaaagtcaccaatccgaaaaacaaag aaactttcatgttgaaatttattgttgtaagcaacaaactccaaagcttgctaggtatagaagctatacaagccatggat ctcgtcaccatcaacaacgacaaatttgttgcaaatctgtctgaatcctgtgaacgtttaggtgatttgggagaagcatc cttgactatcgaccctgaatgtaaacctaaagcattaccgtgtaggaaaattccgcatgcacttaaagacaaggtcaaag ttgaaattgacacccttgtgaagcgtggtatcttggttccagttactaaaccaacaaaatgggtcagccagatggctatc gtacacaaatcaaatgggaaacttagaatttgtattgacccacaagcactcaactcagcattacaacgagagcactataa tcttcccgtattcgatgacatattgccgaaactgcaaaatgctaagattttcagtaaattagacattaaggaggcttttt ggcatgttcgattggacgaaccgtccagtgaacttactactatgatcactccgtttggaaggtatcgatgggcacgctta ccgtttggtctgaaagtatcaagcgaaatatttcagcgtaaactaaacgaagcacttcaagatctagaaggtacatttcc tttagttgatgacataatcattgcaggctgtggtgacaatgaggaaatcgcgaaacaagacaatgcagcaaaacttaatc agttgcgtagccgctgcaaagagcaaaatatcgtacttaatgaagcaaaacaggaaatcgcacttgatgaaatatctttc tatggtcataagatcactagtgatggcatcaaaccaagtaccgacaaagttaaggcgatagtaaatatgcctagtccgac cgacatagcaggagtgaaacgattttgcggtatggtacagtacatgtctcgttttctaccaagtctgtcaactacacttg agccgttgcgcatacttacccgcaaaaatcagccgtggcaatggactgccgagtgcgaacaagcgttcaataacgtgaaa atgcaactcacagatgctcccgtattagcatattttaatccagatgctaatcttgtattacaaacggatagcagtaaaga tggcctcggtgcagttttgttacagaacggaaaaccgattgaatatgcgtctcgttcacttaccaactcacagaagaaat gggcacaaatagagaaggaagctctatccgtactatttggtctcaaacgttttgaccagtatacttttggtcgtaaagtg gtagttgttaatgaccataaaccactggaaactatcttaaagaagccgctttcttcagctccgcgtcgacttcaagacat tatgatggaactacatcgatatgacatcgaatttcagtatctgaaaggtgagaaactcgttatcgccgatacacttagtc gagcattcctacaagaggatcaggacgatcgaccaaggatatttatgtctaccgtcaacgaagacatttcagacgagcgc ttggacgaaattcgagaagctactcgaaacgatttctcgatgagaaaactcattaataccattgagaatggatggcccga caacaaatcagatgtaccaattgcttgtgcaccatactttaatgcacgtgacctactaagtatccatgatggcctagttg ttcgtggtgaggcaatcgttatacctcagtctctacgatctgacataaaagcgcgtctacactcctcgcatttaggatac gactccatggtacgtcgagctagaggaaccgttttctggcctaatatcaattcagatattcgccaaattgctgacaattg cgtagcatgtcaggaacttaaaccgaaaccaacgaaaactccactgatgcagcacgacgatggacaatcaccgtggaaca aaattggtctggatcttttcgagattaaagggcggaattatcttgttagtattgattactacactaacttcatagaagtt gattatctatggaaaactacttcagcagaagtgatacgagtgctaaagaagcaattcgctagatttggtataccgtcgaa aatcatttcggatggaggtccgcaatttacgtcttctgaatttgcgagatttacccgcaactggaaaattaaacaccgta cttcttcacctaatcaccaacgtgctaatggtaaagcggaatcagcagttaaggtgataaaacatcttattttaaaatgc gaacatgatagaaccgatcagaacgaagctttgatggagcaacgcaatacaccacgtcaggatacaggacttagtcccgc acagatgatgttcggacgatcaactcgtacgttattaccgaccgtttgtcgtgaaaagcaggaaccgattaaaaagcgtg aacggagaaggaaatctgtcaaaaattactatgacaaaacgtcaaccgatcacccggaactcaaaatcaatcaaaacata tacttcgaacataaggaaggtcaagtttggattcccgggaaagttatcgatcgacttcggaaacatacgtttcgtgaaat tctgtgcaacggtcgcagaggagatgtcgaaaatgtaaaaagtttaagacagacggacggacgacagacggacggacgac agacggacggacgacagacgacgagaaggaattgggaaatggacgatgatgggcgtggtcccacacagagaagactagcc atagagagaatgaaagctaactcagccgatgtcggaaatctgcctgaaaattataaacgacaccctaatgatgctgaatt ccctgatgaccttggtataaatccccagttagccactgtcaaggctcccacaggacatctggcccggagtggaggattcc gactgtcaaatacattccaggctcactctcatccaatcagcaatgtcacactacatccaagaaaacagatacttgctaca acaagcgatgaccatacatggaaaatgtgggcggtgccaagtggtgacatcataatgacaggggaggggcatacagactg gggtgacaccatagcatcatgtgactcctacggtattatcaaactatgggacgtacgagctgtagccccgatggtcagct ttgaggtgggcccccatcctgccaacagagttgcctttgatcctacaggggctgtattggccattgctagcaatgacagc actgtgaagatgtacgaagttgctagtggaaggatcagcccattggtcggacatgaagatgctgtccaatgtctgacctt tgataaatcaggagagtttatggtgtcaggagggagtgataatactgtcaggatctggtcttag |
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Protein
| Protein ID | pfu_aug1.0_4732.1_16487.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4732.1_16487.t1 MAAFVTLVQNSVLIVPFVLPFECDRTDGTDPIWLKRQHLNSDDSYSDSSDDTVDYWMTPVKYGSKKNIKAHMIVNNTDVH FQLDCGAEINTICMKYVKKEQVRPTSAVLRMYNNTKLGPLGETDLKVTNPKNKETFMLKFIVVSNKLQSLLGIEAIQAMD LVTINNDKFVANLSESCERLGDLGEASLTIDPECKPKALPCRKIPHALKDKVKVEIDTLVKRGILVPVTKPTKWVSQMAI VHKSNGKLRICIDPQALNSALQREHYNLPVFDDILPKLQNAKIFSKLDIKEAFWHVRLDEPSSELTTMITPFGRYRWARL PFGLKVSSEIFQRKLNEALQDLEGTFPLVDDIIIAGCGDNEEIAKQDNAAKLNQLRSRCKEQNIVLNEAKQEIALDEISF YGHKITSDGIKPSTDKVKAIVNMPSPTDIAGVKRFCGMVQYMSRFLPSLSTTLEPLRILTRKNQPWQWTAECEQAFNNVK MQLTDAPVLAYFNPDANLVLQTDSSKDGLGAVLLQNGKPIEYASRSLTNSQKKWAQIEKEALSVLFGLKRFDQYTFGRKV VVVNDHKPLETILKKPLSSAPRRLQDIMMELHRYDIEFQYLKGEKLVIADTLSRAFLQEDQDDRPRIFMSTVNEDISDER LDEIREATRNDFSMRKLINTIENGWPDNKSDVPIACAPYFNARDLLSIHDGLVVRGEAIVIPQSLRSDIKARLHSSHLGY DSMVRRARGTVFWPNINSDIRQIADNCVACQELKPKPTKTPLMQHDDGQSPWNKIGLDLFEIKGRNYLVSIDYYTNFIEV DYLWKTTSAEVIRVLKKQFARFGIPSKIISDGGPQFTSSEFARFTRNWKIKHRTSSPNHQRANGKAESAVKVIKHLILKC EHDRTDQNEALMEQRNTPRQDTGLSPAQMMFGRSTRTLLPTVCREKQEPIKKRERRRKSVKNYYDKTSTDHPELKINQNI YFEHKEGQVWIPGKVIDRLRKHTFREILCNGRRGDVENVKSLRQTDGRQTDGRQTDGRQTTRRNWEMDDDGRGPTQRRLA IERMKANSADVGNLPENYKRHPNDAEFPDDLGINPQLATVKAPTGHLARSGGFRLSNTFQAHSHPISNVTLHPRKQILAT TSDDHTWKMWAVPSGDIIMTGEGHTDWGDTIASCDSYGIIKLWDVRAVAPMVSFEVGPHPANRVAFDPTGAVLAIASNDS TVKMYEVASGRISPLVGHEDAVQCLTFDKSGEFMVSGGSDNTVRIWS |
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