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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_4741.1_59585
Locus scaffold4741.1 : 1 ... 12952 : +
To GenomeBrowser scaffold4741.1:1..12952
Genes list of scaffold scaffold4741.1
Synonym pfu_aug2.0_201.1_03790

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_4741.1_59585.t1 1 1 Methyltransf_23 65 180 1.3e-10 41.2 1.6e-13 1.7e-10 40.8
pfu_aug1.0_4741.1_59585.t1 1 1 Ubie_methyltran 79 184 5.9e-06 25.5 7.8e-09 8.3e-06 25.0
pfu_aug1.0_4741.1_59585.t1 1 1 Methyltransf_31 81 180 8.1e-15 54.7 1.1e-17 1.1e-14 54.2
pfu_aug1.0_4741.1_59585.t1 1 1 Methyltransf_18 82 177 5.2e-10 39.8 8.2e-13 8.7e-10 39.1
pfu_aug1.0_4741.1_59585.t1 1 1 Methyltransf_25 85 179 3.9e-09 36.7 6.3e-12 6.7e-09 36.0
pfu_aug1.0_4741.1_59585.t1 1 1 Methyltransf_11 86 181 7.9e-17 61.5 1.5e-19 1.5e-16 60.6
pfu_aug1.0_4741.1_59585.t1 1 1 Methyltransf_12 86 181 8.8e-12 45.3 2.0e-14 2.1e-11 44.1

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_4741.1_59585.t1 gi|72076117|ref|XP_793185.1| PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like, partial [Strongylocentrotus purpuratus] 9.80909e-45

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues
maleGonad 1

Transcript
Transcript IDpfu_aug1.0_4741.1_59585.t1
Definition-
>pfu_aug1.0_4741.1_59585.t1
gatcacccatcagcaatccaagcttagatactccacagcaaatagagagcggcctattgtcacagataatacaatcgatg
aagaggagcgagagaaatttgctaagcttgctcacacttggtggaacgagagcggggagttccaggctcttcatgccctt
aatgcacttaggataccctggataagagatgccctgatcaacagactggaaacgcctccatcaaaatctggtaaacctct
ggagggcctcaaaatactagacgcgggtagtggaggaggtatactgtcagagcccttggcccgcctaggagcattcatgg
ttggtgtagacatggtggaagacaatatcaaagtagcacagcaccatctgagtgaagatccaagaattgtatccagggtc
aagtatattcaggctacagtagaagatctggttagtacagaggaagagagctttgatgctgtcgtagcctcagaagtggt
ggagcatgtagccaatatagactccttcctcaactcttgtggtcgtctagtcaaggatgtgggttttaagacaaaggtct
ttccaagtcgtattaaggttaaaggtcaaggtctactgcagcgcaacaacaacaccgtatacaacgtcacattaggggag
ttagccatgtgcggcacggggagtcggttccgaagcgggcgcacgacaagatcggcgagtatttcttcaaatttctcgga
tattataccatatttctccaaaattcaaattgcatag

Protein
Protein IDpfu_aug1.0_4741.1_59585.t1
Definition-
>pfu_aug1.0_4741.1_59585.t1
ITHQQSKLRYSTANRERPIVTDNTIDEEEREKFAKLAHTWWNESGEFQALHALNALRIPWIRDALINRLETPPSKSGKPL
EGLKILDAGSGGGILSEPLARLGAFMVGVDMVEDNIKVAQHHLSEDPRIVSRVKYIQATVEDLVSTEEESFDAVVASEVV
EHVANIDSFLNSCGRLVKDVGFKTKVFPSRIKVKGQGLLQRNNNTVYNVTLGELAMCGTGSRFRSGRTTRSASISSNFSD
IIPYFSKIQIA

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