Gene
| Gene Model ID | pfu_aug1.0_4752.1_16501 |
|---|---|
| Locus | scaffold4752.1 : 22907 ... 38725 : - |
| To GenomeBrowser | scaffold4752.1:22907..38725 |
| Genes list of scaffold | scaffold4752.1 |
| Synonym | pfu_aug2.0_2222.1_08785 |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | goosecoid |
| Description | goosecoid (gsc)early development gene |
| mRNA evidence |
| Study field | Biomineralization |
|---|---|
| Gene name | goosecoid |
| Description | It is the best hit to AJ507423.1 Patella vulgata mRNA for goosecoid protein (gsc gene) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4752.1_16501.t1 | 1 | 1 | Homeobox | 123 | 179 | 2.0e-22 | 78.5 | 4.9e-26 | 3.6e-22 | 77.7 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4752.1_16501.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4752.1_16501.t1 atgcccggtgtattaagatacaaatgttctgtcaccaaagataaaaatgagtctgatgaaaatgaagatgaacagggctt cccgtatcagtattctgccgagcaacttgcctgtatcaggaattaccagattggtttgttggcagcctcctcacaacgta actcagcactgttcactatcgacaacatcctgtccccgaggcccctggccgcgccccagcctctacccgcggtccgaccc gagcaccacttcccgcttcctcacctcacaccgctccagagggactattatgcgcgctaccctcatcctgggtttcccgg attttttaatgccttcgactttgacaaattcagtcagaagaggaagaggcggcaccgtaccatcttcacagaggaacaac tggaggagctggagaaaactttccagaagacgcactatcctgacgtactactccgggaggagctagctatgaaagttgat ctgaaggaggaaagagtcgaggtatggttcaaaaacaggagagcgaagtggagaaaacagaagagagaagaagagttaag caaggcaagacttaaagagaaaatgcccacaagtagctcctctcccatcagcgaaaacacaccaagtagtagcagaacgg aagtgacagattctgaacaggaagtagctagtgatgacgtcatgatttctgtagacgatttggaggaggacaattctaac tcagagtgtgagagaagctttggagcagcttctgatgataactatgaaatcttagattatagttccaaatcaaaagacac taatcgaccactcttaccagaacttgctataccaaaatcatgtatttataaagacgttcctgacaaagaaatcgaaggca gtcaggaatcgtgtggaattgagaaattcaaagatcacgacctggctaccaagaactga |
|
Protein
| Protein ID | pfu_aug1.0_4752.1_16501.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4752.1_16501.t1 MPGVLRYKCSVTKDKNESDENEDEQGFPYQYSAEQLACIRNYQIGLLAASSQRNSALFTIDNILSPRPLAAPQPLPAVRP EHHFPLPHLTPLQRDYYARYPHPGFPGFFNAFDFDKFSQKRKRRHRTIFTEEQLEELEKTFQKTHYPDVLLREELAMKVD LKEERVEVWFKNRRAKWRKQKREEELSKARLKEKMPTSSSSPISENTPSSSRTEVTDSEQEVASDDVMISVDDLEEDNSN SECERSFGAASDDNYEILDYSSKSKDTNRPLLPELAIPKSCIYKDVPDKEIEGSQESCGIEKFKDHDLATKN |
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