Gene
Gene Model ID | pfu_aug1.0_4757.1_59595 |
---|---|
Locus | scaffold4757.1 : 706 ... 31109 : + |
To GenomeBrowser | scaffold4757.1:706..31109 |
Genes list of scaffold | scaffold4757.1 |
Synonym | pfu_aug2.0_400.1_00699 |
Manual annotation
Study field | cell cycle |
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Gene name | SMC2 |
Description | blastp top hit to XP_002936738 [Xenopus (Silurana) tropicalis], partial CDS |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_4757.1_59595.t1 | 1 | 1 | SMC_hinge | 306 | 424 | 4.1e-21 | 75.1 | 3.7e-24 | 1.4e-20 | 73.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_4757.1_59595.t1 | gi|147898636|ref|NP_001081372.1| | structural maintenance of chromosomes protein 2 [Xenopus laevis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 5 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
maleGonad | 2 |
mantle | 1 |
Transcript
Transcript ID | pfu_aug1.0_4757.1_59595.t1 |
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Definition | - |
>pfu_aug1.0_4757.1_59595.t1 atgacaacacaaacgtttgtgaacgatgacagagaatgggacaacacttttagtaaaaatctattgctggtcatatactc aatactaaaggaagatataacaccaacattatccaaacttaaggaggagagagcatcgtacctggaatatcagaagatta tacgggaattagaacatctgaataaactctatatcgcctatcagtttgtgtgtgctgaggaaagaaagaagaaaagtgct gaggacctacttgagatgcaaggttctataaaaaccctgaaagagaggatggtggaattggagaacaaagttaaggatct agatggagttatagcagagttagagaagaaaagagacgaggaatcagggagtgttatgcagaaactagaatcaggcttag tacagtgtcaaaaggacgaagccttggctcagagtgctgtggataacaaaaaggaggggttaaaggctgaggtcaagaaa aggaaagagctcaataaaaacatagaggattacatgtatgaacctgataaatctaggattttaatgattgtcttcctctt tacagctgctaaaaatgaaataagcgctgcagaaacagacaccaagcaagctcacatgaggttgaaacatgctcagcaag aaataaagaaaaagcaagatgaacttaaaaagacagaacagggatacaagaaagatcaagcctcgtatgaatctctacaa aagaacctagaaacactacaagctgagatgaagaaacttggatatgaagagggaagggaggagaaattatcatcagagaa gagaacactaacacaagaggttcacaggctacaagaacagttagaaactctggaagctaggtttccacatctgcactttg actacaaagatccagagaagaactttgacagaagaaaagttcatggacttgtatgtaaactgataaaggtcaaggatgtc ggcacggcaacagctctggaggtagcagccggaggaaagctgtacaatgtggtagttgacactgaggtgactggtaagaa gttattacagaagggagagttaagacggaggtacaccatcatcccacttaacaaaatatcggccaggagtatcagtgccg acgtggtcaggagggccgaggacttggttggaagagacaatgtacacacggcactgtcccttatcgggtatgaacgagat ctacaggcagccatggagtttgtgtttggttcagcgtttgtgtgtaaagatatgaactctgccaagaaagtgacgtttga tgagagagtaatgaagaagtctgttacactggaaggtgattcatttgacccggcaggaaccctgactggaggtgctagag ctcataccagttcagttttggagaagcttcaagaattacagaaagtagaagacaatttacgtcaaaagcagtccaaatta actcaagtggaacaagaactgcagtctcttaaaaaaatggcagagaaatttacaagtttaaagcagaagtatgacttgaa atcacaagaggcagaactagtgaagacgagactggaacatagctcacatcatcaacaactagaagaaatacaaaccctcc agacatctatagatgaacaacaagaaatcctgaagtctgctgaggaagtgaagaaaaagatgagtaagaaagccaaagac ctggaagacaagattaaaaatgctaaggctgtcagagagaaggagttacaagaagctgaaaaagcagtcaaagctgccaa gaaaaaaatggaggaatctaacaagaaaatgaaagagaagtatcaggatgcagtaaaagaggctcaagcagatctgaaca aacagaaggacttactgaaggcatgtaacaaagacatcggtaaacgtgtcgccgaacagaaagaactacaaaaggagcat cataactctgatatcaaaatacaggaattagaacacaaaatgtccaagtttcaagacgattcaagggcagctgccagaca gaaaacattaatcttggtcataactgatagggctttcatatttcacatgtactatccttatgacaagacctatagtacct attttacaaaacttgacattttgtccttggctttggagtatgatctactgtacattgtggcagttttactggcaaagatg ctgacgggggcattcgtgtttcacaaactcgtgtttttatcattttacaaggaaacaagcacaaggaggataatatcaag gatggcgtatgtgaggatccttactgtttgtctagttctgctcctgattatagatgttacgacttacgctgagagagtgc agtaccaattcaaaaagtatacatataagaagaaaagagatgataagaaatacaagaatgccaaagccgtatgtgaagtc cgtcctgactgcctagcgatgtacggagctaaccagaccatgtgtatcagaaagtgtgtgtcagaattctgcttcaagga actttatggggacgacccgcttgaagagggggagatagacgtgagatttaattcctttaagggatgcttagctcaggaga aagttggaaacatgcataataaatacagtgggtcaagaaatttaccagagcaagacttaggatactga |
Protein
Protein ID | pfu_aug1.0_4757.1_59595.t1 |
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Definition | - |
>pfu_aug1.0_4757.1_59595.t1 MTTQTFVNDDREWDNTFSKNLLLVIYSILKEDITPTLSKLKEERASYLEYQKIIRELEHLNKLYIAYQFVCAEERKKKSA EDLLEMQGSIKTLKERMVELENKVKDLDGVIAELEKKRDEESGSVMQKLESGLVQCQKDEALAQSAVDNKKEGLKAEVKK RKELNKNIEDYMYEPDKSRILMIVFLFTAAKNEISAAETDTKQAHMRLKHAQQEIKKKQDELKKTEQGYKKDQASYESLQ KNLETLQAEMKKLGYEEGREEKLSSEKRTLTQEVHRLQEQLETLEARFPHLHFDYKDPEKNFDRRKVHGLVCKLIKVKDV GTATALEVAAGGKLYNVVVDTEVTGKKLLQKGELRRRYTIIPLNKISARSISADVVRRAEDLVGRDNVHTALSLIGYERD LQAAMEFVFGSAFVCKDMNSAKKVTFDERVMKKSVTLEGDSFDPAGTLTGGARAHTSSVLEKLQELQKVEDNLRQKQSKL TQVEQELQSLKKMAEKFTSLKQKYDLKSQEAELVKTRLEHSSHHQQLEEIQTLQTSIDEQQEILKSAEEVKKKMSKKAKD LEDKIKNAKAVREKELQEAEKAVKAAKKKMEESNKKMKEKYQDAVKEAQADLNKQKDLLKACNKDIGKRVAEQKELQKEH HNSDIKIQELEHKMSKFQDDSRAAARQKTLILVITDRAFIFHMYYPYDKTYSTYFTKLDILSLALEYDLLYIVAVLLAKM LTGAFVFHKLVFLSFYKETSTRRIISRMAYVRILTVCLVLLLIIDVTTYAERVQYQFKKYTYKKKRDDKKYKNAKAVCEV RPDCLAMYGANQTMCIRKCVSEFCFKELYGDDPLEEGEIDVRFNSFKGCLAQEKVGNMHNKYSGSRNLPEQDLGY |