Gene
| Gene Model ID | pfu_aug1.0_47886.1_12641 |
|---|---|
| Locus | scaffold47886.1 : 1 ... 12438 : + |
| To GenomeBrowser | scaffold47886.1:1..12438 |
| Genes list of scaffold | scaffold47886.1 |
| Synonym | pfu_aug2.0_648.1_27627 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_47886.1_12641.t1 | 4 | 1 | RCC1 | 2 | 53 | 0.0 | 163.3 | 2.6e-15 | 2.0e-11 | 43.9 |
| pfu_aug1.0_47886.1_12641.t1 | 5 | 1 | RCC1_2 | 2 | 14 | 1.3e-29 | 101.1 | 5.6e-05 | 0.41 | 10.3 |
| pfu_aug1.0_47886.1_12641.t1 | 5 | 2 | RCC1_2 | 41 | 69 | 1.3e-29 | 101.1 | 4.0e-15 | 3.0e-11 | 42.6 |
| pfu_aug1.0_47886.1_12641.t1 | 4 | 2 | RCC1 | 57 | 108 | 0.0 | 163.3 | 2.9e-09 | 2.2e-05 | 24.5 |
| pfu_aug1.0_47886.1_12641.t1 | 5 | 3 | RCC1_2 | 95 | 124 | 1.3e-29 | 101.1 | 3.0e-11 | 2.2e-07 | 30.2 |
| pfu_aug1.0_47886.1_12641.t1 | 4 | 3 | RCC1 | 111 | 158 | 0.0 | 163.3 | 8.4e-16 | 6.2e-12 | 45.5 |
| pfu_aug1.0_47886.1_12641.t1 | 5 | 4 | RCC1_2 | 146 | 174 | 1.3e-29 | 101.1 | 8.8e-11 | 6.5e-07 | 28.7 |
| pfu_aug1.0_47886.1_12641.t1 | 4 | 4 | RCC1 | 162 | 211 | 0.0 | 163.3 | 1.4e-18 | 1.0e-14 | 54.4 |
| pfu_aug1.0_47886.1_12641.t1 | 5 | 5 | RCC1_2 | 198 | 214 | 1.3e-29 | 101.1 | 0.00034 | 2.5 | 7.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_47886.1_12641.t1 | gi|350580248|ref|XP_003122992.3| | PREDICTED: secretion-regulating guanine nucleotide exchange factor isoformX1 [Sus scrofa] | 2.0e-39 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_47886.1_12641.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_47886.1_12641.t1 atacaggttctgtttactgctggggagctgggagaaaaggacagctagggattctccaagagggaaaacctccaaacaaa cttttaactccaacaaacgtcgagagtataccatcccaggcagtagcggtggcaactggtgcctaccatactctgatttt aacagataccggtcagttgctaagttggggtgataatcgtcatggccagactggtcaagatcctttagtgaccactcaag tgacattgccaactatccttcaggcttcacttatgaatgaggcagtcgaacaagttcattctggatggacacataatgtg gtcttaacaaagtcaggaaaactatttacatggggtcgggctgattatgggcagctaggtcggccatgtgagcagtcatc cgacttcatgcctcgaccaataataggattggacgtcatcaaatcggtatcatgtggctctgagcataacctagcatgct ctgttagtggcaagctgtattcctgggggtggaatgagcatggtatatgtgggactggggatgaagtgaacgtgccatat cccaagcaggtggcagcacttgcttatcggcatgtgaccagtgtgggatgtggagcaggacattcttttgccgtttgtca aagtgatccatag |
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Protein
| Protein ID | pfu_aug1.0_47886.1_12641.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_47886.1_12641.t1 TGSVYCWGAGRKGQLGILQEGKPPNKLLTPTNVESIPSQAVAVATGAYHTLILTDTGQLLSWGDNRHGQTGQDPLVTTQV TLPTILQASLMNEAVEQVHSGWTHNVVLTKSGKLFTWGRADYGQLGRPCEQSSDFMPRPIIGLDVIKSVSCGSEHNLACS VSGKLYSWGWNEHGICGTGDEVNVPYPKQVAALAYRHVTSVGCGAGHSFAVCQSDP |
|