Gene
| Gene Model ID | pfu_aug1.0_4795.1_23659 |
|---|---|
| Locus | scaffold4795.1 : 67 ... 12102 : + |
| To GenomeBrowser | scaffold4795.1:67..12102 |
| Genes list of scaffold | scaffold4795.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4795.1_23659.t1 | 1 | 1 | Peptidase_M10 | 13 | 145 | 0.0 | 171.7 | 0.0 | 0.0 | 171.2 |
| pfu_aug1.0_4795.1_23659.t1 | 4 | 1 | Hemopexin | 147 | 177 | 2.4e-23 | 81.6 | 0.0013 | 2.7 | 7.8 |
| pfu_aug1.0_4795.1_23659.t1 | 4 | 2 | Hemopexin | 189 | 222 | 2.4e-23 | 81.6 | 1.7e-08 | 3.5e-05 | 23.4 |
| pfu_aug1.0_4795.1_23659.t1 | 4 | 3 | Hemopexin | 233 | 277 | 2.4e-23 | 81.6 | 1.3e-13 | 2.7e-10 | 39.8 |
| pfu_aug1.0_4795.1_23659.t1 | 4 | 4 | Hemopexin | 280 | 320 | 2.4e-23 | 81.6 | 8.6e-09 | 1.8e-05 | 24.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4795.1_23659.t1 | gi|291221485|ref|XP_002730753.1| | PREDICTED: matrix metalloproteinase-19-like [Saccoglossus kowalevskii] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| mantleEdge | 2 |
| mantlePallium | 1 |
| pearlSac | 2 |
Transcript
| Transcript ID | pfu_aug1.0_4795.1_23659.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4795.1_23659.t1 atgacgtcagagggtgagatcgatgacgtcagaggacgagcctattacgacgctttccggaagtggtcagatgtgacacc actggtgttccgggaagtaaggggaggtaatgccgatattctgataagctacgctcgttataaccatggcgacgggagct cgtttgatggaaaaggtgggacccttgcccatgcctttttccctggtaagcaatccatagctggagacacccattttgac gacgacgagaagtggacgatgggcaccaaagaaggaacaaacctggagatcgtagcggcccacgagtttggacatgctat aggaatgagtcattctaatatccaggaagctctgatggcaccatactaccagggatatgatcccaatttccagcttcata gagacgacattgctggaatccaaagtctttatggtcatgacaacagactctacgccgtccgtggacgtaacttgtacagg tttaacagggacggtgtgggaatagaaagtggatatcctaaaaacgccaggaaggtctaccaacgatttcctaaaagtcc agcagcggctgtccaggatcgctacagaagagtctatgtttttaaagacaagagggtattccgatatactgggttcagac tggacgctggctatcctaagagaactatcggtaaaaagaatttcttcagatatccacaagctgccttgatgtggtatgat ggtagaatttatcttttcaagggcgacaagtatagcatatggcgagatgattataaagagcccccacctgggtaccccaa aactatcacttcattctggaggggagtcccaaacaacgtggaagctgcagtccgctggaaccgatatacctacttcttca aaggacaaaattacgtcaaacttaatgacagatctagatcaaagtacttcggctatcccaaaaagaaggcagctccatgg cttgggtgtggtcaacgcaccccaaagtag |
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Protein
| Protein ID | pfu_aug1.0_4795.1_23659.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4795.1_23659.t1 MTSEGEIDDVRGRAYYDAFRKWSDVTPLVFREVRGGNADILISYARYNHGDGSSFDGKGGTLAHAFFPGKQSIAGDTHFD DDEKWTMGTKEGTNLEIVAAHEFGHAIGMSHSNIQEALMAPYYQGYDPNFQLHRDDIAGIQSLYGHDNRLYAVRGRNLYR FNRDGVGIESGYPKNARKVYQRFPKSPAAAVQDRYRRVYVFKDKRVFRYTGFRLDAGYPKRTIGKKNFFRYPQAALMWYD GRIYLFKGDKYSIWRDDYKEPPPGYPKTITSFWRGVPNNVEAAVRWNRYTYFFKGQNYVKLNDRSRSKYFGYPKKKAAPW LGCGQRTPK |
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