Gene
| Gene Model ID | pfu_aug1.0_4795.1_23661 |
|---|---|
| Locus | scaffold4795.1 : 16926 ... 58035 : - |
| To GenomeBrowser | scaffold4795.1:16926..58035 |
| Genes list of scaffold | scaffold4795.1 |
| Synonym | pfu_aug2.0_244.1_13869 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4795.1_23661.t1 | 1 | 1 | AAA_34 | 776 | 904 | 0.0 | 172.8 | 0.0 | 0.0 | 171.8 |
| pfu_aug1.0_4795.1_23661.t1 | 1 | 1 | Helicase_C_4 | 980 | 1255 | 0.0 | 367.3 | 0.0 | 0.0 | 366.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4795.1_23661.t1 | gi|166233534|sp|Q5BJL5.2|SBNO1_RAT | Protein strawberry notch homolog 1 | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4795.1_23661.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4795.1_23661.t1 atgcaatttccatgtttgaccgaggttcgaagcttgtttgtccgaggtctcgtcacaaggtatctacatgtgaaatatca aagccctaccccttatagttcaagagatatagcccaggttaaagttttgtctactgatgacaacgacgacgacaacaaca acaacgacgacgccgagggtatggcattagctctccggactttttcatcccggcaagctaaaaactctgatgtcggttgc gtaataaaacgagtgtacgcaatcattgatgatcaaagcaacagaacacttgcaaaaacagatcttctggacgctcttaa cgttaccggaaacgaaacacattaccttctttcaacttgttccggaaaattgcagaaatccggaagacaggtttacgact tagtcgtaagatctactgatggtgctaacctgatagagctaccctctgttatcgagtgcaacgagcttcctgacgaaaga tcagaaattccgacaccggaagttgctttaaattttgctcatctcgcacgaatttcaggagaaattcctcctatcgataa tactgccgaaatccagcttcttatcggacgggatgtcgtcgaggcgcaccatgtccaggaccagattcttggtcacagag gaacgcccttcgctcaaaaattaaaccttggctgggttattgttggagatgtttgtatcggaaagtctcataagtctacg atgataaacgtcaacaagacattcattacaaaggagggccgcaactcattatttgagccgtgcgcaagcaaaatgacgat caaggaacaattcaaacccgcatgtacacgagcaagtttcaccactgataatcaagaggaaaatatatttcaaaggagtc tgaatgatgagaaagtaggattatcggccgatgatcatcgccgggatcacgatccatgccgggcggctttgtctgtgttc aaaatttgtactagactgaatgcattcacagacatactatctgctgctttagatgagtcagggattacaggagattttga ggaggagtttcaagatgacggacagcatggaatttacaatcaacaagcgggcgtgatcggtagccctccagtgtacacgg gtcatcaacaaagcctgattcctgggcaggtctataatggaggtctgtctagtggcgttatccctagtcaagtacaacaa gatctcgtgccgggacaaggtgacgtcttttctcaggctcttaaaaacctagcatcttcaggagctgcatcggccaatca gtatggtttgccagcaacaggaaggcaagagggtgaaggtcatgcagggatacatcgatcagcctcatcacctgctatca tacgtatcccagcatcctctctgcaaaaactggaaaaaagtacaaacggaattaaagtgcagactagtcagggtacaatc cctcttcagggaggcactagaatcattaaaatcacccgagttgggaataaacaaacaacaagtgctattaaactgccagc atctgctagcaccattaatttgaagaattctaataccacagcggtgaaacttggaagttttgtgacgaaaactccaaaca gcaattctcagacagttaatgtggcgtcaactacgaacaatgcctcaagcgctcagggcatcaatttttcagacttggtg aagtccacaactacaagtggacaaacaatcaacctatcaaatctcgtctccagatatccacaaactggtgctcggacgat aaatctagcagatttagcatccgcaagggggaaaagaatcgtgatttcctctacgtcaggaaacgcatcaatttctaatc tgccgagtgtcatatcctctgggaacactacgttgaattctaccagagtcggaccaaatccgtttttacgtgaaagctcc cccatcatgcggtcagactcgcctgtgcaatttatgggatatacaagacctaacgatcatgtgcgagaaaactcgatctc tttacttcacaacggacctggttcatttcatcacagtgcgtcaacgcctgcaatgtcgtcgttcatggcacataactcta ataatagaatacctaacgatgggattgcggcaattaaaactaatctcactcaaaaagacgtgtctaggttgtggtcaaat gaggatgtgaaattacggaattatggaccagctgtgcagcagatgtccaagcagcaattattgggaggaggttttgagga ggaggaggtggatgatgctgaagcagaggagcttggccatgccgagacatataatgaatatatgcctactaaattatcca ttggtatcaagcatcctgaccctgtggtagagaccagttccctcgccagtgtggaacctcccaacatctggtataaacta tccatcccagagaacatcatagatgagggggagctctcggcactccagttagagtccattacttacgcctcacagaggca tgaggttgtaatggctagcggagagaggggcggcttccttataggtgacggtgctggtgtaggtaaaggtagaacgattg caggaataatctacgaaaactatctgctgggacgcaaacgtgctttatggttgagtgtatccaatgatctgaaagttgac gcagagagagatttacgtgacattggtgctgaacaaacgaacaatcacaaagccaagaaatccaaacccagtcattcctc aggagaaagcggatccgaatcctcagactccggatccgatataagtgaccttgactttgatgaagccagtgaaaattccg acagcgatccagacgatttcaacccgttcggaaatgactcggatagtgatgaaggtatggatgctgtagaacaggctatg gccatgaagagagagttactggacttgttagaggaggtcggcgacaatctgccacccaacaccctggatcatctgataga cgagttagggggaccagagaacgtggcggaaatgacagggagaaaggggcgtgttgtttgtacagacgagggaattaact acgagtcgcggagtgagacggacgtaccactggaaatccttaacttgacagaaaagcagaggtttatggatggagaaaag aatgttgccataatatcagaggctgccagttcaggtatatcgttacaagccgacagacgggcgataaatcagcgtaggcg tgttcacatcacactagagttaccatggagtgcagacagggctatacaacagtttggtagaacacacaggtctaaccaag tgaatgctccagaatacagtttcctgatctcagagttagctggtgaacagagattcgcttcaactgtggcaaaaagactg gagagcttgggagctttaacacatggagatagacgagccacagaatccagagatctcagccggtttaactttgataacaa atacggtagagcagctctagagagtgtaatgaagtccctagtaggatatgaagccccgcttgtatctcttccaaaaacat acaaaggagacttcatggaagacgtaaagaaagccttagctggagttggtattataacattggatgacacactgtcgttc cccatgttagataaagattacaacaacatcagtaagttcctgaacaggatcctgggtatggaggtacagcttcagaacgc tttgtttctgtatttctctaacacactcacttccattatcctggaggccaagagaagtggccgatgggacctgggaatcc ttgacctcgggtcagggggagagagcgtcaagaaactggagaccaagacttttgtcggcagcacgtctgctaacacagcc aggacggaactaactacagtgtcaatagagagaggcatgtcgtggggccaggctatagatatatggagaaagtacactgg actggaggatggtttctatgtctcactgtcgtatgattcgtacgtgcaagagaaactgtgctacaaatacaacattttta gctcgccgggacgaaaaagtcgggagagctattgccataccctcgtcggcgtcgtcatcgttgtcgtcgtccgtagacat aactttaacctgggctatatctcttga |
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Protein
| Protein ID | pfu_aug1.0_4795.1_23661.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4795.1_23661.t1 MQFPCLTEVRSLFVRGLVTRYLHVKYQSPTPYSSRDIAQVKVLSTDDNDDDNNNNDDAEGMALALRTFSSRQAKNSDVGC VIKRVYAIIDDQSNRTLAKTDLLDALNVTGNETHYLLSTCSGKLQKSGRQVYDLVVRSTDGANLIELPSVIECNELPDER SEIPTPEVALNFAHLARISGEIPPIDNTAEIQLLIGRDVVEAHHVQDQILGHRGTPFAQKLNLGWVIVGDVCIGKSHKST MINVNKTFITKEGRNSLFEPCASKMTIKEQFKPACTRASFTTDNQEENIFQRSLNDEKVGLSADDHRRDHDPCRAALSVF KICTRLNAFTDILSAALDESGITGDFEEEFQDDGQHGIYNQQAGVIGSPPVYTGHQQSLIPGQVYNGGLSSGVIPSQVQQ DLVPGQGDVFSQALKNLASSGAASANQYGLPATGRQEGEGHAGIHRSASSPAIIRIPASSLQKLEKSTNGIKVQTSQGTI PLQGGTRIIKITRVGNKQTTSAIKLPASASTINLKNSNTTAVKLGSFVTKTPNSNSQTVNVASTTNNASSAQGINFSDLV KSTTTSGQTINLSNLVSRYPQTGARTINLADLASARGKRIVISSTSGNASISNLPSVISSGNTTLNSTRVGPNPFLRESS PIMRSDSPVQFMGYTRPNDHVRENSISLLHNGPGSFHHSASTPAMSSFMAHNSNNRIPNDGIAAIKTNLTQKDVSRLWSN EDVKLRNYGPAVQQMSKQQLLGGGFEEEEVDDAEAEELGHAETYNEYMPTKLSIGIKHPDPVVETSSLASVEPPNIWYKL SIPENIIDEGELSALQLESITYASQRHEVVMASGERGGFLIGDGAGVGKGRTIAGIIYENYLLGRKRALWLSVSNDLKVD AERDLRDIGAEQTNNHKAKKSKPSHSSGESGSESSDSGSDISDLDFDEASENSDSDPDDFNPFGNDSDSDEGMDAVEQAM AMKRELLDLLEEVGDNLPPNTLDHLIDELGGPENVAEMTGRKGRVVCTDEGINYESRSETDVPLEILNLTEKQRFMDGEK NVAIISEAASSGISLQADRRAINQRRRVHITLELPWSADRAIQQFGRTHRSNQVNAPEYSFLISELAGEQRFASTVAKRL ESLGALTHGDRRATESRDLSRFNFDNKYGRAALESVMKSLVGYEAPLVSLPKTYKGDFMEDVKKALAGVGIITLDDTLSF PMLDKDYNNISKFLNRILGMEVQLQNALFLYFSNTLTSIILEAKRSGRWDLGILDLGSGGESVKKLETKTFVGSTSANTA RTELTTVSIERGMSWGQAIDIWRKYTGLEDGFYVSLSYDSYVQEKLCYKYNIFSSPGRKSRESYCHTLVGVVIVVVVRRH NFNLGYIS |
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