Gene
| Gene Model ID | pfu_aug1.0_4816.1_30800 |
|---|---|
| Locus | scaffold4816.1 : 41086 ... 73534 : + |
| To GenomeBrowser | scaffold4816.1:41086..73534 |
| Genes list of scaffold | scaffold4816.1 |
| Synonym | pfu_aug2.0_82.1_06897 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4816.1_30800.t1 | 1 | 1 | Pkinase | 24 | 233 | 0.0 | 172.5 | 0.0 | 0.0 | 170.1 |
| pfu_aug1.0_4816.1_30800.t1 | 1 | 1 | Pkinase_Tyr | 29 | 217 | 3.6e-25 | 88.5 | 7.1e-28 | 9.5e-25 | 87.1 |
| pfu_aug1.0_4816.1_30800.t1 | 1 | 1 | Kinase-like | 97 | 196 | 9.4e-10 | 37.9 | 2.3e-12 | 3.1e-09 | 36.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4816.1_30800.t1 | gi|297307151|ref|NP_001171981.1| | Rho kinase [Strongylocentrotus purpuratus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_4816.1_30800.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4816.1_30800.t1 atggattgtctgcccttgttttggatttggactatccagcaatcaaacggaacaagagtgttgaacagttcctcaacaaa tataaaacgatcagattccgctttctactgggaggaaagagaaatcatggcaaatgcaaatagtgaatggattgtgcagc tacattatgccttccaagacaacaagttcctctatatggtaatggattatatgccaggtggagacttggtcaatctcatg agtaattacgatgtgccagagaaatgggccaaattctactgtgccgaagtggtgctggcacttaatgccatacatgacat gggctttgttcacagagatgtgaagccagacaacatgttattagacagcaaaggtcaccttaaactagcagattttggaa cttgtatgagaatggataggacaggtatggtacggtccgatacggcagtgggtaccccagattatatatctccagaggtg ctacagtcccagggacgacctaaccattacggcagggaatgtgattggtggtcagtcggtgtcttcctttacgagatgtt agtaggtgacacacccttctacgcagattctttagtcggaacatacggaaaaatcatggatcataaaaattcactcaact ttccacaagatattgaaatgtcagatagtgccaagagtttaatatgtgcattcctcacagatagattattgacagaggtg ggagcaggcagttctccatctaagtctaatcacagaaagctgacaatggaacaagaaaacaaaaagcaattggaatataa aattcaagacatggagaggaaacttgaccttgagattaaatctcgtaaagagcaatctaatagtaatcaaatggtcaacg agaggatatcatcgctagaaaaaacgatagcagacttaaacgaaaaactcaaagttgaaacagatagtgccaatagatta aagaagaccaatacagaattacagcagagatacaacatatcagaacagaattattctgacttgaatgccaaatactcaga tgtctcctcggccagacagcagctggaaaaggaagtgatgaacctgcaagctgaactagaccacgaacgtaatcgctaca aacaagtgaatgaacaagtccttgaactccatgatcgtattgcatcacttcagtctgataaaaggaaaggagaggaaaag gaaagaaatctcagctcagaaattagacgtatccaggagtcaatagttgtactagaaaagagtaaaaagcatttagagat agagttagaccagtttagaaggaaactagaagctgagaccaatgctcacaaggagacggtacggagatttaatgctgaca agaaggacgctctgatgtcaaaggaggaggccaatatcatggctataaagggtatgtaccatgaaatttccgacctgagg gaggaatgtagaggttatgaaaacgaaatcaggaaattgaaagaagatatgtccataaacgatctacagatgaaggaatt acaggaccagctagaggctgaacagtattttagttctctgtaccgaactcaagtgaaggaactgaaagaagacgtggagg agaaagataaaaaattacacgactgggcaacggatgctaaaagtgtcgaacaagaaaaagattcctttgcctctcagtta caacttgcccttgccaaagccgattcggagcagcttgccaggtccattgccgaggagcaactatcagacgttgaaaaaga gaagactgttttagaattagaaataaaggaacttatcaatcgcaataaaggagagctcacaaagaaagacaaccttgtag caatgcttgaagattcgaagaatcagtacaagaagcagattgatacattacaagcagaaagagacgatcttactaatgta gtcaaaaaacttcaagacgatctgaggaatatgcagtccaaaccacaaaacngataa |
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Protein
| Protein ID | pfu_aug1.0_4816.1_30800.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4816.1_30800.t1 MDCLPLFWIWTIQQSNGTRVLNSSSTNIKRSDSAFYWEEREIMANANSEWIVQLHYAFQDNKFLYMVMDYMPGGDLVNLM SNYDVPEKWAKFYCAEVVLALNAIHDMGFVHRDVKPDNMLLDSKGHLKLADFGTCMRMDRTGMVRSDTAVGTPDYISPEV LQSQGRPNHYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYGKIMDHKNSLNFPQDIEMSDSAKSLICAFLTDRLLTEV GAGSSPSKSNHRKLTMEQENKKQLEYKIQDMERKLDLEIKSRKEQSNSNQMVNERISSLEKTIADLNEKLKVETDSANRL KKTNTELQQRYNISEQNYSDLNAKYSDVSSARQQLEKEVMNLQAELDHERNRYKQVNEQVLELHDRIASLQSDKRKGEEK ERNLSSEIRRIQESIVVLEKSKKHLEIELDQFRRKLEAETNAHKETVRRFNADKKDALMSKEEANIMAIKGMYHEISDLR EECRGYENEIRKLKEDMSINDLQMKELQDQLEAEQYFSSLYRTQVKELKEDVEEKDKKLHDWATDAKSVEQEKDSFASQL QLALAKADSEQLARSIAEEQLSDVEKEKTVLELEIKELINRNKGELTKKDNLVAMLEDSKNQYKKQIDTLQAERDDLTNV VKKLQDDLRNMQSKPQNX |
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