Gene
| Gene Model ID | pfu_aug1.0_4847.1_59628 |
|---|---|
| Locus | scaffold4847.1 : 28626 ... 30462 : + |
| To GenomeBrowser | scaffold4847.1:28626..30462 |
| Genes list of scaffold | scaffold4847.1 |
| Synonym | pfu_aug2.0_922.1_08016 |
Manual annotation
| Study field | other |
|---|---|
| Gene name | SRY-related HMG box B protein |
| Description | NCBI BLASTP hit to CAY12631.1 |
| mRNA evidence |
| Study field | other developmental genes |
|---|---|
| Gene name | sox2 |
| Description | Simple NJ tree shows an affinity to sox2(human) |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4847.1_59628.t1 | 2 | 1 | SOXp | 32 | 58 | 5.7e-07 | 30.0 | 0.63 | 3100.0 | -1.2 |
| pfu_aug1.0_4847.1_59628.t1 | 1 | 1 | HMG_box | 34 | 102 | 6.5e-27 | 93.5 | 2.1e-30 | 1.1e-26 | 92.9 |
| pfu_aug1.0_4847.1_59628.t1 | 1 | 1 | HMG_box_2 | 35 | 101 | 9.1e-11 | 41.9 | 3.2e-14 | 1.6e-10 | 41.2 |
| pfu_aug1.0_4847.1_59628.t1 | 2 | 2 | SOXp | 103 | 128 | 5.7e-07 | 30.0 | 2.2e-10 | 1.1e-06 | 29.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4847.1_59628.t1 | gi|229001906|emb|CAY12631.1| | SRY-related HMG box B protein [Platynereis dumerilii] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_4847.1_59628.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4847.1_59628.t1 atgtcaagttgcggagaaatgagcccacaggatctatcatcgggtgcatctaatgacacttactgtgactcctctaaaat gggggccaacggagaacacgtgaaacgccctatgaacgcttttatggtgtggtctaggggacaaagacgtaaaatggctc aggataatcctaaaatgcataattctgaaatttctaaacgtcttggagcagaatggaaacttttatcagaggatgacaag agaccgtttatagatgaagcaaaacgactacgagctttgcatatgaaggaacacccagactacaaatatagaccaagaag gaaacctaaatcattgttaaagaaagataagtacgcctttccaatgcctatgatccccgggatgggtcctctaggagcgc tacccccgggctttggacagctaccaccgtcaacagagggtatgtcattaagcgagaagatgagggccttcctaccacct acttcatctcacggatcttacccgtcccatctagaaccaagcaaagtagaatcttcatctcatggtgcatttagtgctca ggacagactttattcaccctatatgtctgcgctcagtgctcacagcgcgtcagcagcggcagctctcagtgcggcaggga tgcccccggccgcccactcccatcccagtcagtacctcctgccgtgttgcccgccgggctatctgccctcacagtcggac atcacacgcccggtggcgtatgttttcgtcaaaccagaggaccattacaggcatcctataatgtga |
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Protein
| Protein ID | pfu_aug1.0_4847.1_59628.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4847.1_59628.t1 MSSCGEMSPQDLSSGASNDTYCDSSKMGANGEHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKLLSEDDK RPFIDEAKRLRALHMKEHPDYKYRPRRKPKSLLKKDKYAFPMPMIPGMGPLGALPPGFGQLPPSTEGMSLSEKMRAFLPP TSSHGSYPSHLEPSKVESSSHGAFSAQDRLYSPYMSALSAHSASAAAALSAAGMPPAAHSHPSQYLLPCCPPGYLPSQSD ITRPVAYVFVKPEDHYRHPIM |
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