Gene
| Gene Model ID | pfu_aug1.0_4860.1_45060 |
|---|---|
| Locus | scaffold4860.1 : 2472 ... 37815 : - |
| To GenomeBrowser | scaffold4860.1:2472..37815 |
| Genes list of scaffold | scaffold4860.1 |
| Synonym | pfu_aug2.0_529.1_30858 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4860.1_45060.t1 | 2 | 1 | AMP-binding | 31 | 131 | 4.7e-27 | 94.4 | 3.1e-25 | 9.2e-22 | 77.0 |
| pfu_aug1.0_4860.1_45060.t1 | 2 | 2 | AMP-binding | 171 | 229 | 4.7e-27 | 94.4 | 1.8e-06 | 0.0054 | 15.1 |
| pfu_aug1.0_4860.1_45060.t1 | 1 | 1 | AMP-binding_C | 262 | 338 | 1.6e-13 | 51.3 | 1.3e-16 | 3.9e-13 | 50.1 |
| pfu_aug1.0_4860.1_45060.t1 | 1 | 1 | PMP22_Claudin | 360 | 474 | 2.6e-10 | 40.1 | 2.6e-13 | 7.7e-10 | 38.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4860.1_45060.t1 | gi|115891715|ref|XP_001184867.1| | 8.00141e-43 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_4860.1_45060.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4860.1_45060.t1 atgtgtatgtctccgcttctcgtcacttctcgccatgaatcaaactggtttgtaggaggggagatgaacacatgttacaa tgctgtagatcgtcatgtagatcagggtaatggtgagcacacagctatcatatttgacagtcctataaccaaacaagtca gtcggctcacatacaggcaactccagcaagaggtcagcaagtttgccggagtgttgcagagttatggtgtggagaaggga gacagagtgttaatctatatgccaatgatcccagaggccatcattgccatgttaggtactgttagacttggtgccattca ctctctggtgtttggtggctttgcagcgaaggaactttctgtaaggatagagcatgccaagggtaaaccagttagtacac ctgatcctggagtgtatttccgtgtcattaaggagacatatttacatacgtttgtaactttgttttctgtaggatttggt tctgggagaaagatagattatattcatatctatcttttgcaggatcctgaagcaaaatttgctcaaaagtttttgccttt agacaaattccgtgccttgtttgtagcgggggaacactgtgataaagagaccatggagtgggccagacacgccctcagta gtcctatactagacaactggtggcaaacagactattcgactcgaatcgtttctgaccacaacgactcgcgattcgagtcg gagctaagaatcgcgagtctcggtgcactgcgacgaatcgttgcagctctattatttattacacaagcaataatcggtag tgatgacattgctgaagctgctgttgttggtatcccagatgaactgaaaggccaagtgcctcttgggttgtgtgtactca agcatggggttgagaaatctcatgaagatgttataaaaggtgttatagatattgtgaggaccaatatagggcctgtggcc agctttaaactcgctgttatcgtaccaaaactccctaaaacaagatctggtaaaatagctcgtaacacaatcactgcaat ggctgccggacaaccattcaagataggatccacaaaaagcaatgttggactttgggatagctgtatgaaacatgggaaaa acgattcgaaatgcgtaaagttcacaagttccgaagacgccctgccggcagctaagactttcctgctgttaagtctgatt ctcctgatcgccgccattggatgtaacttgatacgattcctttctctcagatcaaacgtctacctatgtattacaacaag catcattcttggcatagcaggtatcttcaccatgataggtattgccttgtacgcccacgtcatacgtaatgtcaccggcc gttatcacttctcactggcgttctccgtgctttcccttctactctcactaacagccggtgctctgtccctcctcgagata cgatgttctggagaggacgaggtcctctccgtcagcggcagcaggaagcacagtgaagggaacgtgaacgagatcccctc atcttcctattcttcggagcaacattctaaagtaacatccgagcaaggaaaagaagaaagttacccactgtctacaatca gagacgagggcagcaatgatgtcaacgagagctcaacagacaatgacgtaaatagtgatataccgacaaagaacgttact caaacaacgcatcaatag |
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Protein
| Protein ID | pfu_aug1.0_4860.1_45060.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4860.1_45060.t1 MCMSPLLVTSRHESNWFVGGEMNTCYNAVDRHVDQGNGEHTAIIFDSPITKQVSRLTYRQLQQEVSKFAGVLQSYGVEKG DRVLIYMPMIPEAIIAMLGTVRLGAIHSLVFGGFAAKELSVRIEHAKGKPVSTPDPGVYFRVIKETYLHTFVTLFSVGFG SGRKIDYIHIYLLQDPEAKFAQKFLPLDKFRALFVAGEHCDKETMEWARHALSSPILDNWWQTDYSTRIVSDHNDSRFES ELRIASLGALRRIVAALLFITQAIIGSDDIAEAAVVGIPDELKGQVPLGLCVLKHGVEKSHEDVIKGVIDIVRTNIGPVA SFKLAVIVPKLPKTRSGKIARNTITAMAAGQPFKIGSTKSNVGLWDSCMKHGKNDSKCVKFTSSEDALPAAKTFLLLSLI LLIAAIGCNLIRFLSLRSNVYLCITTSIILGIAGIFTMIGIALYAHVIRNVTGRYHFSLAFSVLSLLLSLTAGALSLLEI RCSGEDEVLSVSGSRKHSEGNVNEIPSSSYSSEQHSKVTSEQGKEESYPLSTIRDEGSNDVNESSTDNDVNSDIPTKNVT QTTHQ |
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