Gene
| Gene Model ID | pfu_aug1.0_4868.1_16539 |
|---|---|
| Locus | scaffold4868.1 : 1 ... 23785 : - |
| To GenomeBrowser | scaffold4868.1:1..23785 |
| Genes list of scaffold | scaffold4868.1 |
| Synonym | pfu_aug2.0_6026.1_22739 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4868.1_16539.t1 | 1 | 1 | SET | 203 | 268 | 5.3e-07 | 30.0 | 8.1e-11 | 1.2e-06 | 28.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4868.1_16539.t1 | gi|261289415|ref|XP_002603151.1| | hypothetical protein BRAFLDRAFT_63213 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| maleGonad | 2 |
Transcript
| Transcript ID | pfu_aug1.0_4868.1_16539.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4868.1_16539.t1 atgaatagactcgcgtacataaattacttgaaagttgaacgttttggtatcgtatacatcttctctgaaatgatgctatt gaatttgaagacatttaacatgcaattgtataggaggaaagtaattccattcagtgtacctcgcaaaacaacgggaaaga aaaaaagtgccactcaatctgttattagggaagagatagcctgtcttaataggacaaaagcaacaggtgagagcacattg acagaggcaaagcactcgcacagatatccccttagagagctacctcagcagaattacatggacctagaagcaccaaatga tgacgatttcatcttttgtgaagattgtaacagggaacatgaaggtgactgtcctctacatggaccatatgttattgtta atgatactatggttccagcagattgtttagataatgagcgacctcttcaaagccttccggcaggattagttgtgagatca tcaggtatacccaatgctggactaggtgtatgggctatagataccattcctgttagaacaaggtttggtccttacctagg agatattacacaagatgctgatgaggctcactcgacagggtattcttggcagatttactaccatggtaaacctaagcatt ttgtcaacgcatatggcatgaagaatagcaattggatgcgatatgtgaattgtgcgagatcagaaagtgagcaaaatctt gtagcttttcagtatcaaggacatatctactatagaacttacaaagagataaagccaggcacagagctgttagtatggta tggtcatgaatatgggaaggaactaggtatcatcaggaaaaagctagaaatagctcccaagtttgttaatggtgtagatc ttgatggttatctacaagaaagtttgattgaaaaggtaatgaaaaaggagaacaatggacatgatattgttgagtatgac ttgagtagtccgagtcgtatcaaggacaatcaaacaaagatgacacattcagggcatgcttatgagtgtgacaaggctgg gtatggtgctgcttatctcagtcatctcgtgacacatcagaggacacacacaggagaaaagcctt |
|
Protein
| Protein ID | pfu_aug1.0_4868.1_16539.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4868.1_16539.t1 MNRLAYINYLKVERFGIVYIFSEMMLLNLKTFNMQLYRRKVIPFSVPRKTTGKKKSATQSVIREEIACLNRTKATGESTL TEAKHSHRYPLRELPQQNYMDLEAPNDDDFIFCEDCNREHEGDCPLHGPYVIVNDTMVPADCLDNERPLQSLPAGLVVRS SGIPNAGLGVWAIDTIPVRTRFGPYLGDITQDADEAHSTGYSWQIYYHGKPKHFVNAYGMKNSNWMRYVNCARSESEQNL VAFQYQGHIYYRTYKEIKPGTELLVWYGHEYGKELGIIRKKLEIAPKFVNGVDLDGYLQESLIEKVMKKENNGHDIVEYD LSSPSRIKDNQTKMTHSGHAYECDKAGYGAAYLSHLVTHQRTHTGEKP |
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