Gene
| Gene Model ID | pfu_aug1.0_4884.1_23679 |
|---|---|
| Locus | scaffold4884.1 : 4496 ... 29721 : + |
| To GenomeBrowser | scaffold4884.1:4496..29721 |
| Genes list of scaffold | scaffold4884.1 |
| Synonym | pfu_aug2.0_516.1_20861 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | Pifuc-vitellogenin |
| Description | reciprocal BLASTN best hit to NCBI accession GQ227743 (Chlamys farreri vitellogenin mRNA) 439 bits, e-120 and AB084783 (Crassostrea gigas vitellogenin mRNA) 308 bits, 7e-81. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4884.1_23679.t1 | 3 | 1 | Vitellogenin_N | 5 | 144 | 0.0 | 238.9 | 2.2e-29 | 8.2e-26 | 90.3 |
| pfu_aug1.0_4884.1_23679.t1 | 3 | 2 | Vitellogenin_N | 166 | 604 | 0.0 | 238.9 | 0.0 | 0.0 | 159.1 |
| pfu_aug1.0_4884.1_23679.t1 | 3 | 1 | DUF1943 | 435 | 484 | 1.4e-14 | 53.7 | 0.099 | 370.0 | -0.3 |
| pfu_aug1.0_4884.1_23679.t1 | 3 | 2 | DUF1943 | 636 | 654 | 1.4e-14 | 53.7 | 0.22 | 820.0 | -1.4 |
| pfu_aug1.0_4884.1_23679.t1 | 3 | 3 | DUF1943 | 658 | 802 | 1.4e-14 | 53.7 | 3.7e-18 | 1.4e-14 | 53.7 |
| pfu_aug1.0_4884.1_23679.t1 | 3 | 3 | Vitellogenin_N | 1039 | 1189 | 0.0 | 238.9 | 0.15 | 550.0 | -1.6 |
| pfu_aug1.0_4884.1_23679.t1 | 2 | 1 | VWD | 1555 | 1603 | 6.9e-10 | 39.3 | 0.82 | 3000.0 | -1.8 |
| pfu_aug1.0_4884.1_23679.t1 | 2 | 2 | VWD | 1880 | 2004 | 6.9e-10 | 39.3 | 1.9e-13 | 6.9e-10 | 39.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4884.1_23679.t1 | gi|24475539|dbj|BAC22716.1| | vitellogenin [Crassostrea gigas] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4884.1_23679.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4884.1_23679.t1 atgatgggtgcttacacgccgggtaaggagtatgagtatgactatgagactcagatagtgacaggagtacccggcggaag taagatctactcaggactcaaactcaaggcaaaactcaaattccaactcaaatctgcctcagatgtaatggctcagttgg agagaataagattcttaaagataaatgatccaatcgagtccgctgatcccactaaggagacgatccctgacgatgctttc cggacaatgacagaacctgaggcggacaaaatgaaggccgatctccataaaccaatcaagttcaaatatcacaatggcca ggtgacagactttgtcacagaatctgatgaccctgagtattcagtcaacatgaaacgaggtcttctcagcgtgtttcagc tgaacctggatggtcggaaaagtactcaaccacctcgtagtgatccccagaccccggggccatataaccaatatatggtt atggagtcagaaccgttgaaagctagtacagaaattcgttactacatgcgagggacggccaatcagttcctgatacagag cgctattggtgaaagccggtatttcttcactatgtattccgaccagggaggaaatgccgcttcattcatcaaccaaacgt tataccttaccgacacgagatccatacagcaaccaatctctctttccacgagtccaaaacaacacagtcggggactgaaa gcgaccgtaccacggcagccggaatccacaagtcctcaaagtccgtcctctcctagctctcccaggaaacaaacactgac tccggaggaacgcatgagaattaaaacaaagataatcaaacagctagatgccttggcagtgttcagtagcccggatgtca aggaagaggcgggaccaacattaattgaattggcaaaggaaatgaggaaggcagattcttctgtcttagaagacgtttat aaagttatcaagtctaaatcagcaccaaaaatggcattattaaggaaagcatactacgatttactccctgctttgggaac atatgattcggtagaaatgttggcgaagctgatagagaccagagagatgggacatagtgaagcagccacctccttcaaca tggtagctgtttctgctcagccggaggtcgccatagcaaagaaaatattggaattattgaaaagaaaggacgttctggat aacagggagctaaaacgatcagcattcctggctttaggtgccattggtaaccgtatcaatgtggacgcaaagaaaaaagt caaggatatcacacgaaaacaagaacttctccagaaattgtcacgcaactctcaacagcagaagagcgttcaagagttac agaccaaattacagaaattaaaacaaattaagacccagattgagtcagagttagtcacattgaagcaggatatcatcaag gaaatactggacttgcttaaatctccggaaagcgacgacagaatgatggctctgaaaacggcaggaaatgctggctttaa agaacatattccacatattcgttctatcatagaaaacaagaataaacctctcctagagagagtacaagccatattcagtc tcaggaagttggccaatgaagaaccaaaaattgtactagacattctgcttccaagatattttgatcgttctgaccgtgaa gaaatccgcatcagttcatacctagtgtccgctggggctagcccaagtcgaccagttttagaaatgattgccgagtactt acgaacggagccgaatccccatgtcggaacgttcgtcttcacacatctggagcaactgtcgaactcaactcatccatgcc tcatgtcatgggccaagaatgctacttatgctctgaagtttagtagaaagttttctccttcttaccactactcaaggttt atccatctcccttattatgacgacgcaataaaaacaggcacagttgaagaggagctatctgccgggaaaccaatgtcagc acagagcaccatgatgctggctgattccattcacgtggtgatgacggaggctggcctccctttgagactcaggctggacg gtgtggtgatgaccaagatacatggaaagatgacactgacaggagctccatcgctgttcaaaagtcgccgtcctcaacaa aacgttggcgagatggagatgaaattcgacatcacaccaagtgctgttctgaatgtccgtggtgagatggaaatggacgg aaaatacttcaagacaggagctgctataaacttcatgctacagacagacacaccgttgtcttttgatattggtaccgaca ttaggaaaagaaaattatttacgaaagtcaacatggagaagatgagagaaagactattgaaaatggaatcccttccttac acatttatccggcgagatcctctcaacatcaccgaatacccaacattgccagacaagaaggacatagaagtggcggatgg agcaatgaaattcccggtatctaaggactttgggacaaatgagttaggttataccttttcacttagaggtgaacacgttg tgcgtaacttccttcaaggtgtcccatactgtccactcagtggaaaacaacagtattacatgacgctatctccagggtac aaaccacagaaatatgctgaacttcagttgcagctattatattctatagaaaagaaacctagatcgtcttcgccttctgt ctcatcatctcctccaagttcttctcagccaagcgaaagcagtggtgtcctgtcatggctgagtagcttactgggaagtg aagatgattccgctccgcagtcggcaaattcacccaagcagaatcaaaagggccccgtttctgatcttagaacctcagat tcatcaatatcaaagctagagaaagaactaaaacagagtcaacaagacgattcacttttggacgatagaaaatctggatt cgcacttaatctaatgactgtgaatgacaacagaacttctgatagaaaggcccagatgtcggttctctttgaatctacga tggataaagctgcggacaaattacatttcagtttttaccgtacacctattcccggaaaggagactgatccatggaaaatg actgcgaagatggatttaacctacccaaagatgacaaccgatccttcagatctcttgaagtcgtcctaccaagaaaagat acatcgtcttataaaaaagtacacaaaacaagatgcactggatcaacttagtgttcacttgaaagagcaactacctctca agcaatcaaaacttgcgagtaaaattcagagttcggcaaatactagatcaatagtcaacgaagttctcagaactgtgctg gaacaagccccaaaatcagcagatccagaagtccttaagcaacttatagacagtacaaaaaccaaagcaagtcaagtgaa gcaccaactgacaactccttcttctgtggacgaatcaactcgtcaaattcttctcaagaaagcagttttacagcagcaag atattcatagcatacttcatgatgttgtacgaagactgagaaccagtataacccaatctgagaggagaagcattgatcag aaaatatcactcaatgtccgatcattgaaagacctcataagttctcagaccgatttaaaacggacacctgtttcagagat tgttactgctgtgaagactccgagtccagaacaggagcagctggcaagaaagttatcacagctacaacagaaacaagatg aacatttacgggacatatcaagtaggaaaggtgttgacagtgttctcagtgtagatgaaacaaaagtaagaagtgttctg aacaaacttagggaagttgaacaagaaattgaaggcctaccagtttcatccaaaataatacatgatgcggtgctaaaaca acttttagatgcatcattacaacaggaacaaatcactaaggaactccgccgaattcaaaaggactctccaatcttaatgc aaagtgaaaagatcaaggcgaaaacactttcgagtcttgtcaaagagattaagcagaaaagtaattctatatcaaagatt cttgctcaagtaacacatcataaacaagaacttcgggttctctcaaaaacaagttcaaaagaggagaaaacacttctttt aagactacagaaagtcgaactgttacaagtcatgtctctaagaaaactgagttcttccaataaagtttcaatttccaaaa cttcaagtaaacaggataggaaaactgaaattcaaaattctatgcgaaaggctgtaaaagcaggacaacttttagaacag acacttttattgcttaaaaatcaagatcagactcctgaacttttgataaaggccattaaagtatcacaaacacaggcaga cttgatggataaactcgagaaggcagcacaggaagtgagaatacgactggtagcagaatcatccaggaacgacccggaac tggataagattgagaaacaagccgctgtaagaaaattagaactcatttctgcaatacagcagcatctttctgtaaccaag tcgcgaagatcaatcctcaacatagacgaaatcgagacacttaaagaagtacatagagacttggaggacatcagacgaga tcaacgtaaagtacaagcagatgttaggcaaatagctgagttaaagaatgtcaagaaagctcctcaaaaggtgtcgaaag ttattttgaaactgaaggatgttagaaatcaaataaataaattacaacgacaaatgcaaaatagtcgtctgcatgagaaa ataaaagatgtcattgaagatttgaaagatgcgactcgagttcaaagacgaataattaaaagtctcaatgataccctcaa agtagtaaaggatcgaggatctagattgtcgcttgctcagatgctcaaggctcagtctaaaagtatagacagaatcgaga aacaaacagagcagttagaaaacggcatcgacacatctcagagttcaaatataagcaaaacttccaggcggagatggtca gccaaatcgaataatatccgatcaaacagttcagggcaacaagatcctacttctagtcaatcttcatctaaatcgaaaca aagttctaagcagcagtctccagattccagcaaagcacgtgttcagtcggataccaataagaagtcacaaagagcacgtc agaccctctcgacgaaacttgcagtcggaagctcgtcatctcagggacaggatgatcagataaaggctgccttggaaata gaatttggaagtgtaggagaacatccaaaatctatactcatacagatggttggcaaaaagtcgcttgagcagctcctgtg ggaaagcgatcaaatctcgccgatatcgagaagtgaggttacaaaacgttatcttgacgacgaagaggaaggggaggagg aaataaagggatcgtacaaacgacttagaaatgaagtcaacctctttaggcatattcatttcaatgttaaatacccaatg gacgaaatgccgcagtatttacgtgaaatgtccaagcatcttaaggaatttatgaagtacagtttgtatgagcatctcat ctcctcacttcctgatcctgtttacaggaaggacaaagcagaattcattatagtctacaaaaggaatgatagacaggatg ttgaaatttcggcggaaggtagaatagtgaaggtgataccagaaagtcagtccgttcgtgtacaggtggatggacagaca gaagacgtacagttgaacaaaccattggtagttagagaaagtcagcctcaaggaagccataagcatgtactgttagaggt cgtaagagtgaagaccaacaaaattagggtaattgttcctaggaaaggcttacaagtagaatcagatggaataaaagttg acgtcaaggtttcaccatttcactattcccgtgtgtgtggtgtgtgcggtaactacgacgggaagtccgataacgagtac gagacaccagaacgagatattcactcagatcccaaatgttttgtcctaagttacgtcatgagtaacccgaggtgtaacgc cgacagcctcaagtcacagtgtcgtcatctaccccagagcagccgcacaggtccctgcagtctgaaacaggaaaccataa agcgtgaacgaaccaactcctctcaaccggaagtatgttactccgtagaaccagtcaagaaatgtgatcctggctgcaaa ccacgggactcgagacctaaatcggtacagatgcactgtctgtcgaagactgatccgcaggtgccaagacttgaaagaga ccgtcagagccgggttttatccgaactccaaggacaatctgtagattactctgtccgtgtacaggaaccaagacgatgtc gtgatctgtag |
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Protein
| Protein ID | pfu_aug1.0_4884.1_23679.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4884.1_23679.t1 MMGAYTPGKEYEYDYETQIVTGVPGGSKIYSGLKLKAKLKFQLKSASDVMAQLERIRFLKINDPIESADPTKETIPDDAF RTMTEPEADKMKADLHKPIKFKYHNGQVTDFVTESDDPEYSVNMKRGLLSVFQLNLDGRKSTQPPRSDPQTPGPYNQYMV MESEPLKASTEIRYYMRGTANQFLIQSAIGESRYFFTMYSDQGGNAASFINQTLYLTDTRSIQQPISLSTSPKQHSRGLK ATVPRQPESTSPQSPSSPSSPRKQTLTPEERMRIKTKIIKQLDALAVFSSPDVKEEAGPTLIELAKEMRKADSSVLEDVY KVIKSKSAPKMALLRKAYYDLLPALGTYDSVEMLAKLIETREMGHSEAATSFNMVAVSAQPEVAIAKKILELLKRKDVLD NRELKRSAFLALGAIGNRINVDAKKKVKDITRKQELLQKLSRNSQQQKSVQELQTKLQKLKQIKTQIESELVTLKQDIIK EILDLLKSPESDDRMMALKTAGNAGFKEHIPHIRSIIENKNKPLLERVQAIFSLRKLANEEPKIVLDILLPRYFDRSDRE EIRISSYLVSAGASPSRPVLEMIAEYLRTEPNPHVGTFVFTHLEQLSNSTHPCLMSWAKNATYALKFSRKFSPSYHYSRF IHLPYYDDAIKTGTVEEELSAGKPMSAQSTMMLADSIHVVMTEAGLPLRLRLDGVVMTKIHGKMTLTGAPSLFKSRRPQQ NVGEMEMKFDITPSAVLNVRGEMEMDGKYFKTGAAINFMLQTDTPLSFDIGTDIRKRKLFTKVNMEKMRERLLKMESLPY TFIRRDPLNITEYPTLPDKKDIEVADGAMKFPVSKDFGTNELGYTFSLRGEHVVRNFLQGVPYCPLSGKQQYYMTLSPGY KPQKYAELQLQLLYSIEKKPRSSSPSVSSSPPSSSQPSESSGVLSWLSSLLGSEDDSAPQSANSPKQNQKGPVSDLRTSD SSISKLEKELKQSQQDDSLLDDRKSGFALNLMTVNDNRTSDRKAQMSVLFESTMDKAADKLHFSFYRTPIPGKETDPWKM TAKMDLTYPKMTTDPSDLLKSSYQEKIHRLIKKYTKQDALDQLSVHLKEQLPLKQSKLASKIQSSANTRSIVNEVLRTVL EQAPKSADPEVLKQLIDSTKTKASQVKHQLTTPSSVDESTRQILLKKAVLQQQDIHSILHDVVRRLRTSITQSERRSIDQ KISLNVRSLKDLISSQTDLKRTPVSEIVTAVKTPSPEQEQLARKLSQLQQKQDEHLRDISSRKGVDSVLSVDETKVRSVL NKLREVEQEIEGLPVSSKIIHDAVLKQLLDASLQQEQITKELRRIQKDSPILMQSEKIKAKTLSSLVKEIKQKSNSISKI LAQVTHHKQELRVLSKTSSKEEKTLLLRLQKVELLQVMSLRKLSSSNKVSISKTSSKQDRKTEIQNSMRKAVKAGQLLEQ TLLLLKNQDQTPELLIKAIKVSQTQADLMDKLEKAAQEVRIRLVAESSRNDPELDKIEKQAAVRKLELISAIQQHLSVTK SRRSILNIDEIETLKEVHRDLEDIRRDQRKVQADVRQIAELKNVKKAPQKVSKVILKLKDVRNQINKLQRQMQNSRLHEK IKDVIEDLKDATRVQRRIIKSLNDTLKVVKDRGSRLSLAQMLKAQSKSIDRIEKQTEQLENGIDTSQSSNISKTSRRRWS AKSNNIRSNSSGQQDPTSSQSSSKSKQSSKQQSPDSSKARVQSDTNKKSQRARQTLSTKLAVGSSSSQGQDDQIKAALEI EFGSVGEHPKSILIQMVGKKSLEQLLWESDQISPISRSEVTKRYLDDEEEGEEEIKGSYKRLRNEVNLFRHIHFNVKYPM DEMPQYLREMSKHLKEFMKYSLYEHLISSLPDPVYRKDKAEFIIVYKRNDRQDVEISAEGRIVKVIPESQSVRVQVDGQT EDVQLNKPLVVRESQPQGSHKHVLLEVVRVKTNKIRVIVPRKGLQVESDGIKVDVKVSPFHYSRVCGVCGNYDGKSDNEY ETPERDIHSDPKCFVLSYVMSNPRCNADSLKSQCRHLPQSSRTGPCSLKQETIKRERTNSSQPEVCYSVEPVKKCDPGCK PRDSRPKSVQMHCLSKTDPQVPRLERDRQSRVLSELQGQSVDYSVRVQEPRRCRDL |
|