Gene
| Gene Model ID | pfu_aug1.0_491.1_43703 |
|---|---|
| Locus | scaffold491.1 : 9193 ... 24605 : - |
| To GenomeBrowser | scaffold491.1:9193..24605 |
| Genes list of scaffold | scaffold491.1 |
| Synonym | pfu_aug2.0_217.1_23690 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_491.1_43703.t1 | 2 | 1 | RNase_Zc3h12a | 214 | 223 | 8.4e-33 | 113.3 | 0.3 | 2200.0 | -1.7 |
| pfu_aug1.0_491.1_43703.t1 | 2 | 2 | RNase_Zc3h12a | 223 | 317 | 8.4e-33 | 113.3 | 4.3e-36 | 3.2e-32 | 111.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_491.1_43703.t1 | gi|91087973|ref|XP_973205.1| | PREDICTED: probable ribonuclease ZC3H12D isoform X1 [Tribolium castaneum] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_491.1_43703.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_491.1_43703.t1 atggaaaaccaaaacaatgaagagatatgtagagattttgtcgatgggacagaatgccagattctagaatctaatagtga tgatggggacaatatagggacggataacgatactagtctacaaatagatggcgctcctatagacacgggtacaagtcaaa acatcagctcaaattttatattatcaacattaaatagtaaagggggtaaaatgcaaccttgcgtgaatcctcttttgaaa agggaaaacagtgtgatttgtgatagtgacttggcggagtcaagttctctagtctgtgataaagaagttcaaaaattaaa taaatgtctctctagtcagtcatcatgttcatcaacttctacagaggaaagtgaacatgaacaacccgtaaaacaggttc acgacaggactaaggtggaattcgcattaaaacttggctactcagaggtacagttgaccgctgtgttaaaaaagcttgga ccggacgccgggaagaatgaaatcctgtcagaattgatatcactggtttcagaggataattcggacacggactctgatga caattcggacagtttgaaattcggtcaagaattgagcgacctggagaaagttataaaagagaaggaaggaggagactcga aactacgacctattgttatagacggaaatcaagatgttctcctgcagttggagaaggagaaggtagtggtattcaccccc gcccggcggattggcgggaaacgtgtcgtctgctacgatgaccgctacatactgaacttggcagtggaaaccgggggcat tgtggtatccaatgacaactacagggacctggtcaacgaaaagtctgagtacagaaaggtcatcgaggagaggttgctca tgtattcctttgtaaacgacagatttatgccccctgatgatcctctagggagatatggaccaagcttggaaaactttctc tcccgtgaacccaagcagccagaccccctaccacccttgtgcccctatggaagtaaaaaatgtacctatggtaacaagtg caagttttaccacccagagaggggaaacaatccacatagaactgttacagaaaagttagctgaacagaccaagcaaaaac ttcaggaaataagagatagagaaaaagcagagaaaaagaagcagcctctgacgagaaatcctagtggacccaagatggcc cttcagagaactcgttcattggtgccttacagtaatctgccaagcagtctgatagatgatacaccaagccaccttaggaa atcagctagtgatctgacgcaagaatttgacagaaaagcggaaatccgagaaatagagaaagaaaagttacaagaatata aaaaatgtctggaacaagcagaaattaatgaaaagaagaaacaggaagctcaaaggaggaaaaatgatgaagagtcaaaa tgcttgcgaaaacactcaaatgaatctctgattgaaggtcatgggtcaaggtcatcttcacctaagcagaggaaatcacc atcaccgaaacctaaattacaacaggaacagtttctgatcagtggtcacttaatgttggctaaaaagctttcagatgagg catcagagtccaaatatgtgggtgaggaatgtggtagcactaaacgcactgcccatgtccggagtccactgaccatctat catccccctccacaacagacgaatgaccaggggactgttacaactcacccttctttatcaacttcagcaaatgtacggca gcatcgaccactatcaatgcagaaatccagccccttaccgtcagattaccaaccacagactcgtgcaccaaatcgacaca aacagcttagcaggcagtattccttgcaaggttcccatgatcctcgcctttcagcccagaagcaaaaacaagcaagaggt cctagcgagcctcagaacatggcttattatgtacagcagcagcagatgatgcagacccagtacggtcaaaatggacaaaa catggcacaacagccaggctatcccatctcatcataccagatgcctcaaggaaatgacggcaggacaatgtcacaggctg taggacttcaggacatgaggcatcacgcattggctcagcatgaaaacttgttacataacagacaatacctagggctgcct gagtttggtgagcactcgagtctggctagaatgcagagtgcccctgaggttgttcaatacaggcagagggagcaacacaa caaaaaaggcggtagaatgatgcgacaaaacagctcctctgatactcagctccatatgatcggtgacattgatcagacac aagttgactactgcttgtttccaggagggagtgaacaattccctttgtcacaaggttctcattctggtaatgtgacctac aatagagacctgacggagaggcctgatgtattccataatccttctcaagagtatcgtgtgagacaccaatacggtgaaac aaaatggactttcaatcctgtttttggtgtagagcgtcttggatatcaaagcatgcctccaaaagaaggaatcgatgctt tcgagtctgattacccatctagcgagttgcgttccagagggcaggacccttggacaaaccgacaaaaccagttctattca cctcaagctaaacagcatgttcgacaacaaaattttattccaagtaatgaggatcactttagaccgatgattcaatccca acaacctaatatacgtcctaaacgtccactcactaaaacagaatccacagggttcaaggttcatcagcctgttgaacatg ctagtttaagcgttccaagctttggaactgtcgaacaaggttacggcaatattggtgtcattggtcaagagcagaaatca aatcccagaatagacagtagttataattttggacagtaccagatgggatcaaatatgggtaatcaagcccatgctagtgt gtcacatttagatagcggttctggtgcatcagcaacagcggacgatgccccgattcacccaacagacaaacggtataacc tgtattatcatctatgtggacttttcgctgaacataaagttcgtgctgtgatgaaccaacatccggaggagaccaatcct caagaactttgtgcttatataattggtgcaaaatag |
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Protein
| Protein ID | pfu_aug1.0_491.1_43703.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_491.1_43703.t1 MENQNNEEICRDFVDGTECQILESNSDDGDNIGTDNDTSLQIDGAPIDTGTSQNISSNFILSTLNSKGGKMQPCVNPLLK RENSVICDSDLAESSSLVCDKEVQKLNKCLSSQSSCSSTSTEESEHEQPVKQVHDRTKVEFALKLGYSEVQLTAVLKKLG PDAGKNEILSELISLVSEDNSDTDSDDNSDSLKFGQELSDLEKVIKEKEGGDSKLRPIVIDGNQDVLLQLEKEKVVVFTP ARRIGGKRVVCYDDRYILNLAVETGGIVVSNDNYRDLVNEKSEYRKVIEERLLMYSFVNDRFMPPDDPLGRYGPSLENFL SREPKQPDPLPPLCPYGSKKCTYGNKCKFYHPERGNNPHRTVTEKLAEQTKQKLQEIRDREKAEKKKQPLTRNPSGPKMA LQRTRSLVPYSNLPSSLIDDTPSHLRKSASDLTQEFDRKAEIREIEKEKLQEYKKCLEQAEINEKKKQEAQRRKNDEESK CLRKHSNESLIEGHGSRSSSPKQRKSPSPKPKLQQEQFLISGHLMLAKKLSDEASESKYVGEECGSTKRTAHVRSPLTIY HPPPQQTNDQGTVTTHPSLSTSANVRQHRPLSMQKSSPLPSDYQPQTRAPNRHKQLSRQYSLQGSHDPRLSAQKQKQARG PSEPQNMAYYVQQQQMMQTQYGQNGQNMAQQPGYPISSYQMPQGNDGRTMSQAVGLQDMRHHALAQHENLLHNRQYLGLP EFGEHSSLARMQSAPEVVQYRQREQHNKKGGRMMRQNSSSDTQLHMIGDIDQTQVDYCLFPGGSEQFPLSQGSHSGNVTY NRDLTERPDVFHNPSQEYRVRHQYGETKWTFNPVFGVERLGYQSMPPKEGIDAFESDYPSSELRSRGQDPWTNRQNQFYS PQAKQHVRQQNFIPSNEDHFRPMIQSQQPNIRPKRPLTKTESTGFKVHQPVEHASLSVPSFGTVEQGYGNIGVIGQEQKS NPRIDSSYNFGQYQMGSNMGNQAHASVSHLDSGSGASATADDAPIHPTDKRYNLYYHLCGLFAEHKVRAVMNQHPEETNP QELCAYIIGAK |
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