Gene
Gene Model ID | pfu_aug1.0_491.1_43708 |
---|---|
Locus | scaffold491.1 : 41506 ... 55325 : + |
To GenomeBrowser | scaffold491.1:41506..55325 |
Genes list of scaffold | scaffold491.1 |
Synonym | pfu_aug2.0_217.1_23693 |
Manual annotation
Study field | Biomineralization |
---|---|
Gene name | sod |
Description | reciprocal TBLASTN best hit to NCBI Accession FM177867.1 Mytilus galloprovincialis mRNA for superoxide dismutase (sod gene) |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_491.1_43708.t1 | 1 | 1 | Sod_Cu | 5 | 148 | 0.0 | 168.2 | 0.0 | 0.0 | 168.1 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_491.1_43708.t1 | gi|215263232|emb|CAQ68509.1| | superoxide dismutase [Mytilus galloprovincialis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
egg-4cell | 1 |
8-16cell | 1 |
egg-Dshape | 1 |
trochophore | 1 |
>Adult tissues | |
Dshape | 1 |
adductorMuscle | 1 |
maleGonad | 1 |
mantle | 1 |
mantleEdge | 1 |
mantlePallium | 1 |
pearlSac | 1 |
Transcript
Transcript ID | pfu_aug1.0_491.1_43708.t1 |
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Definition | - |
>pfu_aug1.0_491.1_43708.t1 atgtcagttaaagctgtttgtgttttaaaaggagacggtgctgtgacgggaacaattcatttggcacaggaggatggaca ttgtaaagtaactggagaaatcacaggtctagctcctggtcaacatggattccacgtacatcagtttggggacaacacaa atggttgcactagtgctggtccacacttcaatccccatggtaaaacgcatggtgctccaagtgatgaaattaggcatgta ggtgacttgggaaatgtcacagcagatgctagcggcaaggctgttataaacataacagatagtcaagtaacccttactgg acctaattcagtgataggaagaacagtggtggtgcatgcggacattgatgatcttggtaaaggaggtcatgagttgagtt tgactacagggaatgccggagggcgattggcatgcggtgtgatcggtatcaccaagtaa |
Protein
Protein ID | pfu_aug1.0_491.1_43708.t1 |
---|---|
Definition | - |
>pfu_aug1.0_491.1_43708.t1 MSVKAVCVLKGDGAVTGTIHLAQEDGHCKVTGEITGLAPGQHGFHVHQFGDNTNGCTSAGPHFNPHGKTHGAPSDEIRHV GDLGNVTADASGKAVINITDSQVTLTGPNSVIGRTVVVHADIDDLGKGGHELSLTTGNAGGRLACGVIGITK |