Gene
| Gene Model ID | pfu_aug1.0_4931.1_30820 |
|---|---|
| Locus | scaffold4931.1 : 55056 ... 57891 : + |
| To GenomeBrowser | scaffold4931.1:55056..57891 |
| Genes list of scaffold | scaffold4931.1 |
| Synonym | pfu_aug2.0_386.1_20699 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-Myc |
| Description | Best hit to BAG61453 unnamed protein product [Homo sapiens] with 1e-42 by a BLASTP search against NCBI nr database. The predicted protein has one Myc_N domain. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4931.1_30820.t1 | 5 | 1 | Myc_N | 1 | 109 | 1.1e-23 | 83.9 | 2.4e-24 | 1.2e-20 | 73.9 |
| pfu_aug1.0_4931.1_30820.t1 | 5 | 2 | Myc_N | 107 | 136 | 1.1e-23 | 83.9 | 9.3e-08 | 0.00046 | 19.4 |
| pfu_aug1.0_4931.1_30820.t1 | 5 | 3 | Myc_N | 152 | 174 | 1.1e-23 | 83.9 | 1.4e-05 | 0.069 | 12.3 |
| pfu_aug1.0_4931.1_30820.t1 | 5 | 4 | Myc_N | 194 | 254 | 1.1e-23 | 83.9 | 0.12 | 600.0 | -0.7 |
| pfu_aug1.0_4931.1_30820.t1 | 5 | 5 | Myc_N | 268 | 305 | 1.1e-23 | 83.9 | 0.045 | 220.0 | 0.7 |
| pfu_aug1.0_4931.1_30820.t1 | 1 | 1 | HLH | 304 | 355 | 1.0e-11 | 44.3 | 4.4e-15 | 2.2e-11 | 43.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4931.1_30820.t1 | gi|259013287|ref|NP_001158444.1| | myc proto-oncogene protein [Saccoglossus kowalevskii] | 4.0e-39 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| maleGonad | 1 |
Transcript
| Transcript ID | pfu_aug1.0_4931.1_30820.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4931.1_30820.t1 atggactacgatacatttcagccttgcttttatgaaaacgagacagagctgtcacctgtaggatcatatccaaatgaaga catgtggaagaagtttgagttgcttcccaccccacccctttccccacagagagatgaccagtttgattctaccctggatt tggagaacctcacactgccactgacagattacattctgaatgatgatgatgatgcctcgctatttgagaaaatgactttt ccggaatcacctccttcgcctagtttacattctaaattaattcaggattgtatgtggtcaggtgattctggacgttacaa gacaggagacaagctgtcaacatcactggatgtcaactcctcagattgtgtggatcctgcagctgtcttcccgtacccca tgcatagcatcactggttacatgagtgaaacgaagctacacaacctgggtactgaaacaccttctgattcagaagaggag attgatgttgtcactgttgaacgccaacaacaacaagttccagctgtatcaggcaaaaggaaagctactcttctcatcca aagtgttaaaactgaaccatcatccgaattgtcatctcccgctaaaacgacagttaccgtgaaagtgaaagtagacagac cactgcagcaaacggagcagccaaggagagttgagtgtccgactgatgtacataactattgtcaacccttcaaacgtgtt cgctcaatgccatcttcagcaagcagttcaccatcacattcaaaacgttttaaacgggaattaagtgtaccagaatttca taaacgtgtatcacagaaactacattcatcacatcgtatccgttcacactattgtagtagcaatacgtcaagtagaacat catcagactctgaagattgcccagagggcaagaggagtcaacacaatgacttggaacgtaaacgtagaaatgacctcaaa tttagtttctttgctctcagggatagtataccagacttaatgaaacaggaacgtgcgcctaaagttctcattcttaaaaa ggcatctgaacacatacgaaaactgggtcatgaagaacagagacttgtagaagataaggaaatgttgagtgcaaaacacg agcagttgttaaggactttagagcatctacgtgctagagaattttaa |
|
Protein
| Protein ID | pfu_aug1.0_4931.1_30820.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4931.1_30820.t1 MDYDTFQPCFYENETELSPVGSYPNEDMWKKFELLPTPPLSPQRDDQFDSTLDLENLTLPLTDYILNDDDDASLFEKMTF PESPPSPSLHSKLIQDCMWSGDSGRYKTGDKLSTSLDVNSSDCVDPAAVFPYPMHSITGYMSETKLHNLGTETPSDSEEE IDVVTVERQQQQVPAVSGKRKATLLIQSVKTEPSSELSSPAKTTVTVKVKVDRPLQQTEQPRRVECPTDVHNYCQPFKRV RSMPSSASSSPSHSKRFKRELSVPEFHKRVSQKLHSSHRIRSHYCSSNTSSRTSSDSEDCPEGKRSQHNDLERKRRNDLK FSFFALRDSIPDLMKQERAPKVLILKKASEHIRKLGHEEQRLVEDKEMLSAKHEQLLRTLEHLRAREF |
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