Gene
| Gene Model ID | pfu_aug1.0_4932.1_38023 |
|---|---|
| Locus | scaffold4932.1 : 49456 ... 66008 : + |
| To GenomeBrowser | scaffold4932.1:49456..66008 |
| Genes list of scaffold | scaffold4932.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_4932.1_38023.t1 | 2 | 1 | LRR_9 | 41 | 110 | 1.5e-17 | 63.6 | 8.6e-06 | 0.016 | 14.7 |
| pfu_aug1.0_4932.1_38023.t1 | 5 | 1 | LRR_4 | 43 | 74 | 3.2e-31 | 106.3 | 9.2e-07 | 0.0017 | 17.9 |
| pfu_aug1.0_4932.1_38023.t1 | 3 | 1 | LRR_8 | 44 | 88 | 1.1e-16 | 60.2 | 3.1e-09 | 5.7e-06 | 25.9 |
| pfu_aug1.0_4932.1_38023.t1 | 4 | 1 | LRR_6 | 53 | 68 | 1.5e-07 | 30.7 | 0.0031 | 5.8 | 7.3 |
| pfu_aug1.0_4932.1_38023.t1 | 5 | 2 | LRR_4 | 54 | 96 | 3.2e-31 | 106.3 | 9.2e-13 | 1.7e-09 | 37.0 |
| pfu_aug1.0_4932.1_38023.t1 | 4 | 1 | LRR_1 | 55 | 75 | 1.7e-12 | 45.5 | 0.00076 | 1.4 | 9.2 |
| pfu_aug1.0_4932.1_38023.t1 | 5 | 1 | LRR_7 | 55 | 68 | 1.2e-07 | 30.6 | 0.036 | 67.0 | 4.3 |
| pfu_aug1.0_4932.1_38023.t1 | 2 | 2 | LRR_9 | 59 | 206 | 1.5e-17 | 63.6 | 8.0e-20 | 1.5e-16 | 60.4 |
| pfu_aug1.0_4932.1_38023.t1 | 5 | 3 | LRR_4 | 77 | 114 | 3.2e-31 | 106.3 | 6.4e-13 | 1.2e-09 | 37.5 |
| pfu_aug1.0_4932.1_38023.t1 | 3 | 2 | LRR_8 | 77 | 114 | 1.1e-16 | 60.2 | 1.4e-09 | 2.6e-06 | 27.1 |
| pfu_aug1.0_4932.1_38023.t1 | 4 | 2 | LRR_1 | 77 | 97 | 1.7e-12 | 45.5 | 7.3e-06 | 0.014 | 15.3 |
| pfu_aug1.0_4932.1_38023.t1 | 5 | 2 | LRR_7 | 77 | 90 | 1.2e-07 | 30.6 | 0.0032 | 5.9 | 7.5 |
| pfu_aug1.0_4932.1_38023.t1 | 4 | 2 | LRR_6 | 77 | 97 | 1.5e-07 | 30.7 | 2.3e-05 | 0.042 | 13.9 |
| pfu_aug1.0_4932.1_38023.t1 | 5 | 4 | LRR_4 | 98 | 142 | 3.2e-31 | 106.3 | 2.6e-12 | 4.9e-09 | 35.6 |
| pfu_aug1.0_4932.1_38023.t1 | 5 | 3 | LRR_7 | 98 | 114 | 1.2e-07 | 30.6 | 0.0021 | 4.0 | 8.0 |
| pfu_aug1.0_4932.1_38023.t1 | 4 | 3 | LRR_6 | 98 | 110 | 1.5e-07 | 30.7 | 0.05 | 93.0 | 3.5 |
| pfu_aug1.0_4932.1_38023.t1 | 3 | 3 | LRR_8 | 99 | 157 | 1.1e-16 | 60.2 | 6.6e-11 | 1.2e-07 | 31.3 |
| pfu_aug1.0_4932.1_38023.t1 | 4 | 3 | LRR_1 | 100 | 116 | 1.7e-12 | 45.5 | 5.1e-05 | 0.094 | 12.7 |
| pfu_aug1.0_4932.1_38023.t1 | 4 | 4 | LRR_6 | 121 | 136 | 1.5e-07 | 30.7 | 0.0037 | 6.9 | 7.0 |
| pfu_aug1.0_4932.1_38023.t1 | 5 | 5 | LRR_4 | 123 | 161 | 3.2e-31 | 106.3 | 2.1e-09 | 3.8e-06 | 26.3 |
| pfu_aug1.0_4932.1_38023.t1 | 5 | 4 | LRR_7 | 123 | 137 | 1.2e-07 | 30.6 | 0.0022 | 4.0 | 8.0 |
| pfu_aug1.0_4932.1_38023.t1 | 4 | 4 | LRR_1 | 124 | 143 | 1.7e-12 | 45.5 | 0.00028 | 0.53 | 10.5 |
| pfu_aug1.0_4932.1_38023.t1 | 5 | 5 | LRR_7 | 148 | 163 | 1.2e-07 | 30.6 | 0.36 | 660.0 | 1.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_4932.1_38023.t1 | gi|291241218|ref|XP_002740510.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_4932.1_38023.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4932.1_38023.t1 atggtcgtaggccctcagtctggtgtgaggtatatcacagaggatttgattaagaaaattgccagagaagatgctataga tatgatcatcaatctaaacttgactctggctaaggagggtggcaagaaaatcaagtacattgaaaatttggatcgcctga agagactgcaagtgctgaatctcggttcaaacatgattgaaaagatcgagaaattagaaaaactcctcaagctaagggag ctaaatctgtcgtataataatatttcaaaaatcgagggacttgagaatctaacttatttgcaagtgctaaacctgacggg gaattacatagaacatattcctgtgtggatggggaaaagactaaaggcactacgtacattacacctgggaagaaacaacc tgcaatctttgagtgagttggccaagttaaagccattaccagatctgacacagctgacaatagccgagaaccctgtagcc ggtctacctcactgccgactttacctggtgtttcacctgagaaccttagaggtcctggatagtcagccggtaacagagag ggatagacaaggtgccagggagagatttgaacaagaggaagttgaaaggcttgaaaagaaagtagaacaagatgactcga gattacgtaagcttgaggaagagaagaatttgtccgctcaggaatcctcattcctcaaagcgaaggaagaggagtatcta cggcaacagaggatgtcgatggaacgcatgcaggaaatggaaagggaactcaccacgaaggatgatttgctcaagaagaa gactcaggagttaaacaaggcatgtgagaaacattatcagctagaacaagaactagccttttataagatagactccaagt ttgatagcttaggaaaaagtccaggatccttccatcaggtataa |
|
Protein
| Protein ID | pfu_aug1.0_4932.1_38023.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_4932.1_38023.t1 MVVGPQSGVRYITEDLIKKIAREDAIDMIINLNLTLAKEGGKKIKYIENLDRLKRLQVLNLGSNMIEKIEKLEKLLKLRE LNLSYNNISKIEGLENLTYLQVLNLTGNYIEHIPVWMGKRLKALRTLHLGRNNLQSLSELAKLKPLPDLTQLTIAENPVA GLPHCRLYLVFHLRTLEVLDSQPVTERDRQGARERFEQEEVERLEKKVEQDDSRLRKLEEEKNLSAQESSFLKAKEEEYL RQQRMSMERMQEMERELTTKDDLLKKKTQELNKACEKHYQLEQELAFYKIDSKFDSLGKSPGSFHQV |
|